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AT2G46915.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF3754)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF3754); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3754 (InterPro:IPR022227); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3754) (TAIR:AT3G19340.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IGNWeggNOG:ENOG410XV58EMBL:CP002685EnsemblPlants:AT2G46915
EnsemblPlants:AT2G46915.1entrez:819305GeneID:819305GO:GO:0016021
Gramene:AT2G46915.1hmmpanther:PTHR33645hmmpanther:PTHR33645:SF1InParanoid:F4IK40
InterPro:IPR022227KEGG:ath:AT2G46915OMA:IRDTCEQPaxDb:F4IK40
Pfam:PF12576PRIDE:F4IK40Proteomes:UP000006548RefSeq:NP_850462.2
TAIR:AT2G46915TMHMM:TMhelixUniGene:At.27400UniGene:At.63511
UniProt:F4IK40
Coordinates (TAIR10) chr2:-:19274018..19277707
Molecular Weight (calculated) 79387.20 Da
IEP (calculated) 5.57
GRAVY (calculated) -0.18
Length 708 amino acids
Sequence (TAIR10)
(BLAST)
001: MLSLRNLTTS FVALPSRSKP SSSPSLRRRL VRCRLTEAAT FSPIDVVSGE SERAVGSLTE LKNGGGWKVE DELPSAEDGG EGGVEDDDSE EEEGISSIHV
101: PREKYINVSK SDLVNGIVTK LLDSQDGGDA DIFLLLSSCL DSILHAEHKR ILEQMRADFV ATQSLEEEEL KNSEPRSVNG YEGLSFPLAD GFDIWNFLIS
201: SGKHAKKRSA ESVMAATRFQ RSFIQLLDNA GFEELSARDL ALTSALNTDY LLTLPVYVDW KKASESNAIV FRRGFATEKE KGLLLVEKLD YIQSKVLQVI
301: FSTIAKPLRK VGKLINKALS EASQTQEIQD LSEGMKVWLK DLSLFKESYL DQTSDNFLKD GFLPDSVLPM QLAAQRAVSR YEGLLTPVGP RAKLFRKLLG
401: WIGFISRDYE TPSQLANDSS SSEPYLRPIF LSRMTLADIW KPASKKACGN DIWKRIKTSI SILLSPSTLQ EPAFEELILL YTKDASEKDD KNKDETRSSL
501: QLEIFERIPI PDLPVIFPHK KLYFRIIDTV RLDIASILGL TAYFVNYKFE NISSSPSAFF LDVIAVTALV IYATRVVLGY KQTWDRYQLL VNKTLYEKTL
601: ASGFGSVHFL LDASEQQQYK EAILTYAIIL QAGKNQNMSY KGVGDRCERF MYDTFKIKVE MRVEKAISTL VRLGLVTETL VDSNTKLQAV PCPQAYISLK
701: ELWSSLLG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)