AT4G25290.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 0.994 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : DNA photolyases;DNA photolyases | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
DNA photolyases;DNA photolyases; FUNCTIONS IN: DNA photolyase activity; INVOLVED IN: DNA repair; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), DNA photolyase, N-terminal (InterPro:IPR006050), Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT4G36530.1); Has 6717 Blast hits to 6715 proteins in 1229 species: Archae - 120; Bacteria - 4210; Metazoa - 285; Fungi - 40; Plants - 525; Viruses - 0; Other Eukaryotes - 1537 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:12941486..12944994 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 78273.40 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.91 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.15 | ||||||||||||||||||||||||||||||||||||||||
| Length | 692 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAFLALPHFL HLRLRRNDRK NRCKCCLSSA TNEGSTAVVW FKHDLRVDDH PGLLAASKHR AVIPLYVLDR RILSRYTTDT LELAIIALED LRKTLKKQGS 101: NLMLRYGNAE NVIEDLVKEV RAPFVFVEEE VEYHLCEVLD AVKNKLEGVS LSGESPRIVA WRTPFYESQN LTDLPQSWEE FKKLKLPLTL PVPAAKFSSP 201: GSELQWGSVP TLDDLKDYLK ESLWEIENSW REMAQASAER VLMERLGNLK ESSMEPIVDG SLGKKVDNSV FVTSKRDTVG GGNEVVLNAL AGYLRYLEGT 301: SRDDWQEVHA RLRDAETRPG ASFFKLFGPV LCLGIVSRRS VHYEAIEYEK ERNAGFISPF GYSAATVSAA TDAVCSMEWY YLLALSRERI DEKRHAIRIW 401: RWKGYLIQYT VVGNEGPAVL LVHGFGAFLE HYRDNVDNIV NSKNRVWTIT VLGFGKSEKP NIIYTELLWA ELLRDFMAEV VGEPAHCVGN SIGGYFVALM 501: AFLWPALVKS VVLVNSAGNV VPGYSPLPIS RERRVPFGAQ FGSRLLLFFL QLNVKKLLKD CYPVKPERAD DFLVTEMLRA SRDPGVVMVL ESIFGFDLSL 601: PLNYLLKGFE EKTLVIQGME DPISDPQKKV ALLKELCPAM VIKKVKAGHC PHDEISEEVN PIICEWIVKV TNDDRELKAS SSQQLYHSNK QN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)