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AT4G18810.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31975158 (2020): plastid
  • PMID:31932409 (2020): plastid
  • PMID:31818904 (2020): mitochondrion
  • PMID:31186290 (2019): plastid plastid stroma
  • PMID:30962257 (2019): plastid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30135097 (2018): plastid
  • PMID:29967049 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23549413 (2013): plastid
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:14760709 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NAD(P)-binding Rossmann-fold superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast, vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), NADH:ubiquinone oxidoreductase intermediate-associated protein 30 (InterPro:IPR013857), NmrA-like (InterPro:IPR008030); BEST Arabidopsis thaliana protein match is: high chlorophyll fluorescence phenotype 173 (TAIR:AT1G16720.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0702eggNOG:KOG1203EMBL:AY072319EMBL:BT008364
EMBL:CP002687EnsemblPlants:AT4G18810EnsemblPlants:AT4G18810.1entrez:827615
ExpressionAtlas:Q8VYA4Gene3D:3.40.50.720GeneID:827615Gramene:AT4G18810.1
hmmpanther:PTHR13194hmmpanther:PTHR13194:SF19InterPro:IPR008979InterPro:IPR013857
InterPro:IPR016040Pfam:PF05368Pfam:PF08547Pfam:PF13460
PhylomeDB:Q8VYA4Proteomes:UP000006548RefSeq:NP_193616.2SMR:Q8VYA4
STRING:3702.AT4G18810.2SUPFAM:SSF49785SUPFAM:SSF51735TAIR:AT4G18810
UniGene:At.43671UniProt:Q8VYA4
Coordinates (TAIR10) chr4:-:10322622..10325735
Molecular Weight (calculated) 65471.20 Da
IEP (calculated) 8.51
GRAVY (calculated) -0.29
Length 596 amino acids
Sequence (TAIR10)
(BLAST)
001: MEVSSSLKLS SSLSPSIIKL QGSSSSIDIK FSKYTSLPKP FLQLDDKSRR LRDQQVSHSL ELRSYRKRVT AKSGSQGWDF GRFVKTLYFF NGPPSPLKFV
101: SSVFEKLTNG ATEEPVAEMG TSGIILVAGA TGGVGRRIVD ILRKRGLPVK ALVRNEEKAR KMLGPEIDLI VADITKENTL VPEKFKGVRK VINAVSVIVG
201: PKEGDTPERQ KYNQGVRFFE PEIKGDSPEL VEYIGMKNLI NAVRDGVGLE NGKLIFGVGD NTFKDLPWGA LDDVVMGGVS ESNFIVDLTA GENGGPTGIF
301: KGIVSTTNNG GFTSVRTKNF PEAENVSAYD GLELRLKGDG LRYKLIVRTS QDWDTVGYTA SFDTSPGQWQ SVRLPFSSLR PVFRARTVTD APPFNASSII
401: SLQLMFSKFE YDGKLNPTFK EGPFELPLSS IRAYIQDPVT PRFVHVGSAG VTRPERPGLD LSKQPPAVRL NKELDFILTY KLKGEDLIRD SGIPFAIVRP
501: CALTEEPAGA DLIFEQGDNI TGKVSRDEVA RICIAALESP YALNKTFEVK STVPFSEPFT VDPENPPPEK DYNEYFKTLK DGITGKEALE QSTVAV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)