suba logo
AT5G20140.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : SOUL heme-binding family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SOUL heme-binding family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2358 (InterPro:IPR018790), SOUL haem-binding protein (InterPro:IPR006917); BEST Arabidopsis thaliana protein match is: SOUL heme-binding family protein (TAIR:AT3G10130.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IFJYeggNOG:ENOG410XT9UEMBL:AY065160EMBL:BT000072
EMBL:CP002688EnsemblPlants:AT5G20140EnsemblPlants:AT5G20140.1entrez:832136
ExpressionAtlas:Q8VZ90GeneID:832136Gramene:AT5G20140.1hmmpanther:PTHR11220
hmmpanther:PTHR11220:SF35HOGENOM:HOG000241940InterPro:IPR006917InterPro:IPR011256
InterPro:IPR018790PANTHER:PTHR11220Pfam:PF04832Pfam:PF10184
PhylomeDB:Q8VZ90Proteomes:UP000006548RefSeq:NP_197514.2STRING:3702.AT5G20140.2
SUPFAM:SSF55136TAIR:AT5G20140UniGene:At.23061UniGene:At.31224
UniProt:Q8VZ90
Coordinates (TAIR10) chr5:-:6799047..6800892
Molecular Weight (calculated) 43161.90 Da
IEP (calculated) 7.54
GRAVY (calculated) -0.33
Length 378 amino acids
Sequence (TAIR10)
(BLAST)
001: MATVNQQLYR PILTAVGSDC RRHVTTRFLP VPRRNVTTRL RPILSLEVGK EVASAPSTVN MEELVGFLYE DLPHLFDDQG IDKTAYDERV KFRDPITKHD
101: TISGYLFNIA FLKNIFTPQF QLHWAKQTGP YEITTRWTMV MKFIPLPWKP ELVFTGLSIM EVNPETNKFC SHLDLWDSIK NNDYFSLEGL VDVFKQLRIY
201: KTPDLETPKY QILKRTANYE VRNYEPFIVV ETIGDKLSGS SGFNNVAGYI FGKNSTMEKI PMTTPVFTQT TDTQLSSDVS VQIVIPSGKD LSSLPMPNEE
301: KVNLKKLEGG FAAAVKFSGK PTEDVVQAKE NELRSSLSKD GLRAKKGCML ARYNDPGRTW NFIMRNEVII WLEDFSLD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)