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AT1G77090.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: photosynthesis; LOCATED IN: thylakoid, thylakoid lumen, chloroplast thylakoid lumen, chloroplast stroma, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II oxygen evolving complex protein PsbP (InterPro:IPR002683), Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich (InterPro:IPR016124), Mog1/PsbP, alpha/beta/alpha sandwich (InterPro:IPR016123); BEST Arabidopsis thaliana protein match is: Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (TAIR:AT3G56650.1); Has 207 Blast hits to 207 proteins in 35 species: Archae - 0; Bacteria - 22; Metazoa - 0; Fungi - 0; Plants - 130; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).
Protein Annotations
BioCyc:MetaCyc:AT1G77090-MONOMEReggNOG:ENOG410IIFHeggNOG:ENOG4111I2HEMBL:AC002291
EMBL:AF370571EMBL:AK228434EMBL:CP002684EnsemblPlants:AT1G77090
EnsemblPlants:AT1G77090.1entrez:844043Gene3D:3.40.1000.10GeneID:844043
Genevisible:O49292GO:GO:0005509GO:GO:0009507GO:GO:0009534
GO:GO:0009543GO:GO:0009570GO:GO:0009579GO:GO:0009654
GO:GO:0015979GO:GO:0019898GO:GO:0031977Gramene:AT1G77090.1
hmmpanther:PTHR31407hmmpanther:PTHR31407:SF18HOGENOM:HOG000244007InParanoid:O49292
InterPro:IPR002683InterPro:IPR016123KEGG:ath:AT1G77090OMA:PHVFITA
PaxDb:O49292Pfam:O49292Pfam:PF01789PhylomeDB:O49292
PIR:G96799PRIDE:O49292PRO:PR:O49292ProteinModelPortal:O49292
Proteomes:UP000006548RefSeq:NP_565149.2STRING:3702.AT1G77090.1SUPFAM:SSF55724
TAIR:AT1G77090UniGene:At.43604UniProt:O49292
Coordinates (TAIR10) chr1:-:28960576..28961875
Molecular Weight (calculated) 28503.00 Da
IEP (calculated) 7.60
GRAVY (calculated) -0.24
Length 260 amino acids
Sequence (TAIR10)
(BLAST)
001: MMETALLRYC VNFSGHKKIS AHQRSNSEIP KTSPGGCEDE WCARVLSRRS VMASGLVSST TALAFPREGL AVVKQGLLAG RVPGLSEPDE EGWRTYRRPD
101: EKSGGHGVGW SPIIPYAFSV PQDWNEVPVS IADLGGTEID LRFASPKEGR LSVIVAPVLR FADNLGDDVK IENIGQPAKV INAFGPEVIG ENVEGKVLSS
201: NVAEHDGRLY YQFELEPPHV LITATAAGNR LYLFSVTGNG LQWKRHYKDL KRIASSFRIV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)