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AT5G55400.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
golgi 0.483
cytosol 0.241
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:15539469 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Actin binding Calponin homology (CH) domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Actin binding Calponin homology (CH) domain-containing protein; FUNCTIONS IN: actin binding; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Actinin-type, actin-binding, conserved site (InterPro:IPR001589), Calponin-homology (InterPro:IPR016146), Calponin-like actin-binding (InterPro:IPR001715); BEST Arabidopsis thaliana protein match is: fimbrin 1 (TAIR:AT4G26700.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5069eggNOG:KOG0046EMBL:AB015479EMBL:CP002688
EnsemblPlants:AT5G55400EnsemblPlants:AT5G55400.1entrez:835633Gene3D:1.10.418.10
GeneID:835633Genevisible:Q9FJ70GO:GO:0005773GO:GO:0005856
GO:GO:0046872Gramene:AT5G55400.1hmmpanther:PTHR19961hmmpanther:PTHR19961:SF37
HOGENOM:HOG000213447InParanoid:Q9FJ70InterPro:IPR001589InterPro:IPR001715
InterPro:IPR011992KEGG:ath:AT5G55400OMA:WANDMSSPaxDb:Q9FJ70
Pfam:PF00307Pfam:Q9FJ70Pfscan:PS50021PhylomeDB:Q9FJ70
PRIDE:Q9FJ70PRO:PR:Q9FJ70PROSITE:PS00020PROSITE:PS50021
ProteinModelPortal:Q9FJ70Proteomes:UP000006548RefSeq:NP_200351.1scanprosite:PS00020
SMART:SM00033SMR:Q9FJ70STRING:3702.AT5G55400.1SUPFAM:SSF47473
SUPFAM:SSF47576TAIR:AT5G55400UniGene:At.50531UniProt:Q9FJ70
Coordinates (TAIR10) chr5:-:22455535..22458950
Molecular Weight (calculated) 79792.10 Da
IEP (calculated) 4.88
GRAVY (calculated) -0.25
Length 714 amino acids
Sequence (TAIR10)
(BLAST)
001: MSGFVGVIVS DPWLQSQLTQ VELRSLNSKF VALKNQSGKV TLEDLPSVLV KVKSLSSSFK EKEIKEILGG LGSDYESDDD LDFESFLKVY LNLRDKAADK
101: AGGGLKHSSS FLKAGTTTLH TINQSEKGSF VLHINRYLGD DPFLKQFLPL DPDSNDLYEL VKDGVLLCKL INIAVPGTID ERAINTKRVL NPWERNENHT
201: LCLNSAKAVG CSVVNIGTQD LAEGRPHLVL GLISQLIKIQ LLADLSLKKM PQLVELVEDN EDIEEFLRLP PEKVLLKWMN FHLKKGGYKK TVGNFSSDLK
301: DAQAYAYLLN VLAPEHCDPA TLNAEDDLER ANMVLEHAER MNCKRYLTAE EIVEGSSYLN LAFVAQIFHE RNGLSTDGRF SFAEMMTEDL QTCRDERCYR
401: LWINSLGIES YVNNVFEDVR NGWILLEVVD KVYPGSVNWK QASKPPIKMP FRKVENCNQV VKIGKEMRFS LVNVAGNDIV QGNKKLILGF LWQLMRTHML
501: QLLKSLRSRT RGKDMTDSEI ISWANRKVRI MGRKSQIESF KDKSLSSGLF FLDLLWAVEP RVVNWNLVTK GESDDEKRLN ATYIVSVARK LGCSVFLLPE
601: DIVEVNQKMI LILTASIMYW SLQQQSSSSE SSSSSSDSSS THSTTTTCTS TCTSTDASPA PSVTGEDEVS SLNGEVSSLT IEEDNEVSSL TIEEDNDADI
701: LSDITSISEE AANE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)