AT1G04200.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.973 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dymeclin (InterPro:IPR019142); Has 395 Blast hits to 389 proteins in 117 species: Archae - 0; Bacteria - 0; Metazoa - 262; Fungi - 21; Plants - 68; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:1109676..1113875 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 82647.80 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 5.62 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.12 | ||||||||||||||||||||||||||||
| Length | 732 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGGVPSTPRK TGGDDVSVAE YLIATFVGEK SFPLASDFWN KLLELPLSSR WPSDRVQQAC ELFAQSNGYT RHLAKLLIHL SWCLQELLQA SDDQSSLYKK 101: AVNATYISSV FLKYLIENGK SDSLQELHLS LDESEPVPHG FVMDQDIQNF VMHSVLSFIG SNEVSPNSYV LHQELLNFML VTMSTQLLSG PSHGPTDANP 201: FIDAAMTQEK SLVSLVVRRL LLNYISRHRT PPNAKSYMYS DGDSQGILER VGSAAASLVL LPLNYLVSNS GGSKNPLAEC SLHVLLILIN YHKSIMSDES 301: MTDKSDDSAT SESVSKVHVF SSDNTFSKAL ANARDVEFDR SDVEGNAHPA GPHVRIPFAS LFDTLGMFLA DEGAVLLLYS LLQGNSDFKE YVLVRTDLDT 401: LLMPILETLY NASKRTSSNQ IYMMLIVLLI LSQDSSFNSS IHKMILPSVP WYKEHLLHQT SLGSLMVIIL IRTVQHNLSK LRDVYLQTTC LATLANMAPH 501: AHHLSAYASQ RLVSLFYMLS RKYNKLSDLT GDKLQSIKIN LSGEDVGVSE DLAAELQIFT DFLRLVLDIL NAILTYALPR NPEIVYAIMH RQEVFQPFKN 601: HPRFHELVEN IYTVLDFFNS RMDSQRSDRE WSVQKVLQFI INNCRSWRGE GMKMFTQLHF SYEQESHPEE FFIPYVWQLA FSRCGFGFNP DAINLFPVPH 701: PVEKEIEDER GEESEGKAKV QELNEQRIVF DP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)