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AT1G04160.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.997
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31911558 (2020): mitochondrion
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22550958 (2012): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : myosin XI B
Curator
Summary (TAIR10)
Encodes a member of the type XI myosin protein family involved in root hair elongation.
Computational
Description (TAIR10)
myosin XI B (XIB); FUNCTIONS IN: motor activity; INVOLVED IN: root hair elongation, actin filament-based movement; LOCATED IN: myosin complex; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Dil domain (InterPro:IPR018444), Dilute (InterPro:IPR002710), Myosin, N-terminal, SH3-like (InterPro:IPR004009), Myosin head, motor domain (InterPro:IPR001609), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: myosin 2 (TAIR:AT5G43900.3); Has 26358 Blast hits to 18103 proteins in 1674 species: Archae - 321; Bacteria - 2193; Metazoa - 15182; Fungi - 1812; Plants - 1278; Viruses - 89; Other Eukaryotes - 5483 (source: NCBI BLink).
Protein Annotations
BioGrid:24481eggNOG:COG5022eggNOG:KOG0160EMBL:AC002411
EMBL:CP002684EnsemblPlants:AT1G04160EnsemblPlants:AT1G04160.1entrez:839246
Gene3D:4.10.270.10GeneID:839246Genevisible:F4I460GO:GO:0003774
GO:GO:0005524GO:GO:0005737GO:GO:0016459GO:GO:0030048
Gramene:AT1G04160.1hmmpanther:PTHR13140hmmpanther:PTHR13140:SF256HOGENOM:HOG000029608
InParanoid:F4I460InterPro:IPR000048InterPro:IPR001609InterPro:IPR002710
InterPro:IPR004009InterPro:IPR027401InterPro:IPR027417iPTMnet:F4I460
KEGG:ath:AT1G04160ncoils:CoilOMA:FADRYHIPaxDb:F4I460
Pfam:F4I460Pfam:PF00063Pfam:PF00612Pfam:PF01843
Pfam:PF02736Pfscan:PS50096Pfscan:PS51126Pfscan:PS51456
PIR:T00957PRIDE:F4I460PRINTS:PR00193PRO:PR:F4I460
PROSITE:PS50096PROSITE:PS51126PROSITE:PS51456ProteinModelPortal:F4I460
Proteomes:UP000006548RefSeq:NP_171912.2SMART:SM00015SMART:SM00242
SMART:SM01132SMR:F4I460STRING:3702.AT1G04160.1SUPFAM:SSF52540
TAIR:AT1G04160tair10-symbols:ATXIBtair10-symbols:XI-8tair10-symbols:XI-B
tair10-symbols:XIBUniGene:At.42479UniProt:F4I460
Coordinates (TAIR10) chr1:+:1086495..1096146
Molecular Weight (calculated) 169503.00 Da
IEP (calculated) 7.81
GRAVY (calculated) -0.33
Length 1500 amino acids
Sequence (TAIR10)
(BLAST)
0001: MVATFNPAVG SHVWVEDPDE AWLDGEVVEI NGDQIKVLCA SGKQVVVKDS NIYPKDVEAP ASGVEDMTRL AYLHEPGVLQ NLQSRYDINE IYTYTGSILI
0101: AVNPFRRLPH LYSSHMMTQY KGASLGELSP HPFAVADAAY RQMVNEGVSQ SILVSGESGA GKTESTKLLM RYLAFMGGRG AATEGRTVEQ KVLESNPVLE
0201: AFGNAKTVKN NNSSRFGKFV EIQFDQSGRI SGAAIRTYLL ERSRVCQVSD PERNYHCFYM LCAAPEEDAK KFKLGDPKIY HYLNQSKCIQ LDAMNDAEEY
0301: HATKKAMDVV GISSEEQDAI FRVVASILHL GNIEFAKGTE IDSSIPRDEK SWFHLKTAAE LLMCNEKSLE DSLCKRIMAT RDETITKTLD PEAALLSRDA
0401: LAKVMYSRLF DWLVEKINTS IGQDPDSKYL IGVLDIYGFE SFKTNSFEQF CINLTNEKLQ QHFNQHVFKM EQEEYKKEEI NWSYIEFVDN QDILDLIEKK
0501: PGGIIALLDE ACMFPRSTHE TFAQKLYQTY KNHKRFTKPK LARSDFTICH YAGDVTYQTE LFLDKNKDYV IAEHQALLNA STCSFVANLF PPVSDDSKQS
0601: KFSSIGTRFK QQLVSLLEIL NTTEPHYIRC IKPNNLLKPG IFENQNVLQQ LRCGGVMEAI RISCAGYPTR KHFDEFLNRF GIIAPQVLDK NSNEPAACKK
0701: LLDKAGLEGY QIGKSKVFLR AGQMADLDTR RTEILGRSAS IIQRKVRSYL AQKTFIQLRI SATQIQAVCR GYLARSIYEG MRREAAALKI QRDLRKFLAR
0801: KAYTELFSAT ILIQAGMRGM VSRKELCLRR QTKAATIIQT RCRVYLARLH YRKLKKAAIT TQCAWRGKVA RKELKNLKMA ARETGALQEA KNKLEKQVEE
0901: LTWRLQLEKR MRTDLEEAKK QENAKYESSL EEIQNKFKET EALLIKEREA AKTVSEVLPI IKEVPVVDQE LMEKLTNENE KLKGMVSSLE IKIDETAKEL
1001: HETARISQDR LKQALAAESK VAKLKTAMQR LEEKISDMET EKQIMLQQTI LNTPVKSVAG HPPTATIKNL ENGHRTNLEN QFNEVEVNGN AGKSAAERQL
1101: ENVDTLIDCV KENIGFSNGK PIAAFTIYKC LLHWKCFESE KTSAFDRLIE MIGSAIENED DNGHLAYWLT NTSALLFLLQ KSLKPAGAGA TASKKPPITT
1201: SLFGRMALSF RSSPNLAAAA EAAALAVIRP VEAKYPALLF KQQLAAYVEK IFGMIRDNLK KELSALISMC IQAPRISKGG IQRSARSLGK DSPAIHWQSI
1301: IDGLNSLLAI LKDNYVPLVL IQKIHTQTFS FVNVQLFNSL LLRKECCTFS NGEFVKSGLA ELELWCGQVN EYAGPSWDEL KHIRQAVGFL VIHQKYRVSY
1401: DDIVHDLCPI LSVQQLYRIC TLYWDDCYNT RSVSQEVISS MRALMTEESN DADSNSFLLD DNSSIPFSID EISNSMHEKD FASVKPAKEL LENPEFVFLH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)