AT3G01810.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.996 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: nucleolar protein gar2-related (TAIR:AT2G42320.2); Has 1327 Blast hits to 470 proteins in 132 species: Archae - 2; Bacteria - 131; Metazoa - 139; Fungi - 114; Plants - 114; Viruses - 0; Other Eukaryotes - 827 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:289218..292557 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 101709.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.34 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.49 | ||||||||||||||||||||||||||||||||
| Length | 921 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVLGLSSKNR RCSSVQVDYL IHIHDIKPWP PSQSLRSLRS VVIQWENGDR NSGTTSVVAP SLGSVIGEGK IEFNESFKLP LTLLKDVSAR GKGGDVFFKN 101: VLELNLYEPR REKTHQLLAT ATIDLAVYGV VKESFSLTAQ MNSKRSYRNA TQPVLYLTIQ PVSRRRASSS SMNSLKDEAK NGGESVSALM NEEYYKEAEI 201: ASITDDDISS HSSLTVSSST LESNGGFSVR TEEEEHERIN KNPRGNGHER SKSVSESRQR QIADQIPSRS SSVDLSSVFH LPEGISDSAP NTSLSGLEHC 301: ANVFITDTNE SSKLASNGQH NNGEAKSVPL QIDNLSENAS PRASVNSQDL TSDQEPESIV EKSRKVKSVR SSLDINRSNS RLSLFSERKE AKVYPNSTHD 401: TTLESKIKNL ESRVKKLEGE LCEAAAIEAA LYSVVAEHGS SSSKVHAPAR RLLRLYLHAC RETHLSRRAN AAESAVSGLV LVAKACGNDV PRLTFWLSNT 501: IVLRTIISDT SAEEELPVSA GPGPRKQKAE RETEKRSSLK WKDSPLSKKD IKSFGAWDDP VTFITALEKV EAWIFSRVVE SIWWQTLTPR MQSSAASTRE 601: FDKGNGSASK KTFGRTPSST NQELGDFSLE LWKKAFREAH ERLCPLRGSG HECGCLPIPA RLIMEQCVAR LDVAMFNAIL RDSDDNFPTD PVSDPIADLR 701: VLPIPSRTSS FGSGAQLKNS IGNWSRWLTD LFGIDDEDDD SSDENSYVEK SFKTFNLLKA LSDLMMLPKD MLLNSSVRKE VCPMFGAPLI KRVLNNFVPD 801: EFCPDPVPDA VLKSLESEEE AEKSIITSYP CTAPSPVYCP PSRTSISTII GNFGQPQAPQ LSRIRSSITR KAYTSDDELD ELSSPLAVVV LQQAGSKKIN 901: NGDADETIRY QLLRECWMNG E |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)