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AT5G17310.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 0.518
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:21166475 (2011): cytosol
  • PMID:17644812 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : UDP-glucose pyrophosphorylase 2
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
UDP-glucose pyrophosphorylase 2 (UGP2); FUNCTIONS IN: UTP:glucose-1-phosphate uridylyltransferase activity, nucleotidyltransferase activity; INVOLVED IN: response to cadmium ion, callose deposition in cell wall, response to salt stress, metabolic process, pollen development; LOCATED IN: plasma membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: UTP--glucose-1-phosphate uridylyltransferase (InterPro:IPR002618), Hantavirus nucleocapsid protein (InterPro:IPR002214); BEST Arabidopsis thaliana protein match is: UDP-GLUCOSE PYROPHOSPHORYLASE 1 (TAIR:AT3G03250.1); Has 1116 Blast hits to 1112 proteins in 411 species: Archae - 0; Bacteria - 382; Metazoa - 242; Fungi - 229; Plants - 150; Viruses - 0; Other Eukaryotes - 113 (source: NCBI BLink).
Protein Annotations
eggNOG:COG4284eggNOG:KOG2638EMBL:CP002688EnsemblPlants:AT5G17310
EnsemblPlants:AT5G17310.1entrez:831596ExpressionAtlas:F4KGY8Gene3D:3.90.550.10
GeneID:831596GO:GO:0019013GO:GO:0070569Gramene:AT5G17310.1
gramene_pathway:2.7.7.10gramene_pathway:2.7.7.9gramene_pathway:GALACTMETAB-PWYgramene_pathway:PWY-3821
gramene_pathway:PWY-621gramene_pathway:PWYQT-4437gramene_pathway:PWYQT-4466gramene_pathway:PWYQT-4467
gramene_pathway:SUCSYN-PWYhmmpanther:PTHR11952hmmpanther:PTHR11952:SF13InterPro:IPR002214
InterPro:IPR002618InterPro:IPR029044iPTMnet:F4KGY8PANTHER:PTHR11952
PaxDb:F4KGY8Pfam:PF01704PRIDE:F4KGY8ProDom:PD001501
ProteinModelPortal:F4KGY8Proteomes:UP000006548RefSeq:NP_850837.1SABIO-RK:F4KGY8
SMR:F4KGY8STRING:3702.AT5G17310.2SUPFAM:SSF53448TAIR:AT5G17310
tair10-symbols:AtUGP2tair10-symbols:UGP2UniGene:At.20807UniProt:F4KGY8
Coordinates (TAIR10) chr5:-:5696955..5699671
Molecular Weight (calculated) 43751.90 Da
IEP (calculated) 8.05
GRAVY (calculated) -0.12
Length 390 amino acids
Sequence (TAIR10)
(BLAST)
001: MRYAVYSFFR FHFLFLFLCR SVIEVRDGLT FLDLIVIQIE NLNNKYNCKV PLVLMNSFNT HDDTQKIVEK YTKSNVDIHT FNQSKYPRVV ADEFVPWPSK
101: GKTDKDGWYP PGHGDVFPSL MNSGKLDAFL SQGKEYVFIA NSDNLGAIVD LKILKHLIQN KNEYCMEVTP KTLADVKGGT LISYEGKVQL LEIAQVPDEH
201: VNEFKSIEKF KIFNTNNLWV NLKAIKKLVE ADALKMEIIP NPKEVDGVKV LQLETAAGAA IRFFDNAIGV NVPRSRFLPV KATSDLLLVQ SDLYTLVDGF
301: VTRNKARTNP TNPAIELGPE FKKVASFLSR FKSIPSIVEL DSLKVSGDVW FGSGVVLKGK VTVKANAGTK LEIPDNAVLE NKDINGPEDL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)