suba logo
AT5G58770.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Undecaprenyl pyrophosphate synthetase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Undecaprenyl pyrophosphate synthetase family protein; FUNCTIONS IN: dehydrodolichyl diphosphate synthase activity; INVOLVED IN: dolichol biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Di-trans-poly-cis-decaprenylcistransferase-like, conserved site (InterPro:IPR018520), Di-trans-poly-cis-decaprenylcistransferase-like (InterPro:IPR001441); BEST Arabidopsis thaliana protein match is: Undecaprenyl pyrophosphate synthetase family protein (TAIR:AT5G58782.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
EC:2.5.1.-eggNOG:COG0020eggNOG:KOG1602EMBL:BT044613
EnsemblPlants:AT5G58770EnsemblPlants:AT5G58770.1entrez:835991ExpressionAtlas:B5X0P4
Gene3D:3.40.1180.10GeneID:835991GO:GO:0016765Gramene:AT5G58770.1
HAMAP:MF_01139hmmpanther:PTHR10291hmmpanther:PTHR10291:SF6InterPro:IPR001441
InterPro:IPR018520KEGG:ath:AT5G58770KO:K11778ncoils:Coil
OMA:HDDVSYGPANTHER:PTHR10291PaxDb:B5X0P4Pfam:PF01255
Pfam:Q56Y11PhylomeDB:B5X0P4PhylomeDB:Q56Y11PRIDE:B5X0P4
PROSITE:PS01066ProteinModelPortal:B5X0P4Proteomes:UP000006548RefSeq:NP_200685.1
scanprosite:PS01066SMR:B5X0P4STRING:3702.AT5G58770.1SUPFAM:SSF64005
TAIR:AT5G58770TIGRfam:TIGR00055TIGRFAMs:TIGR00055UniGene:At.50538
UniProt:B5X0P4UniProt:Q56Y11
Coordinates (TAIR10) chr5:+:23734396..23735495
Molecular Weight (calculated) 35944.90 Da
IEP (calculated) 5.92
GRAVY (calculated) -0.39
Length 310 amino acids
Sequence (TAIR10)
(BLAST)
001: MLSLRVPTPT SFDFRRYQAG DLERRWRLSR DSFLSFSPKF EENRGFRFGV KSSKSDVSFT AAEEEETLPE ELHAELMPKH VAIIMDGNGR WAKNRGLQPW
101: DGHRAGVEAL KEIVELCGKW GIQVLTVFAF STDNWIRPRI EIDFLFSLFE RSLKTEFQNL AKNNVRISII GDSSKLPKSL LRVINEVEEV TKNNTRLQLI
201: VAVGYSGKYD VLQACRGIAR RVKDGEIEVE EIDERLIEEE LETNCTEFPY PDLLIRTSGE LRVSNFLLWQ LAYTELFFAQ ELWPDFGRSG FIEALMSFQQ
301: RQRRFGGRKS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)