AT4G17840.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Abortive infection protein (InterPro:IPR003675); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G35260.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:9918222..9920190 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 44912.70 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 8.19 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.08 | ||||||||||||||||||||||||||||
| Length | 422 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGLPLLSCSS TRVTLSSSSS SSWCSSGSGG FRSSSKLFDS PACSRSDLKK RSGKRNSRLN GLSLEKLRSI KASSSSAGQS SSEVIDDGDA AARGLAVTSG 101: DVTSVGSFSS GEFVGAGSGG LAGPSGEVTS VGEFVGGSGG DFKDWDKIGA IVRLSYGIGI YCGMAVAGRF ICEVAGIDYT GGFNASLDTI IAGLGYASPP 201: IMALLFILDD EVVKLSPHAR AIRDVEDDEL RGFFQGMSAW QFILVVTASS VGEELFYRAA FQGALADIFL RGTDLISDSR GMVALTGLLP PFVPFAQVFA 301: ATITAALTGS LYYIAASPKD PTYIMAPVLK TRSARDELKK LFAAWYERRQ MKKIYSPLLE GLLGLYLGFE WIQTNNLLAP IITHGIYSAV VLGNGLWKLH 401: HHQQRLRLRV QKLETEGDNN SR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)