AT1G55960.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 0.387 endoplasmic reticulum 0.329 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Polyketide cyclase/dehydrase and lipid transport superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Polyketide cyclase/dehydrase and lipid transport superfamily protein; CONTAINS InterPro DOMAIN/s: Lipid-binding START (InterPro:IPR002913); BEST Arabidopsis thaliana protein match is: Polyketide cyclase/dehydrase and lipid transport superfamily protein (TAIR:AT3G13062.1); Has 265 Blast hits to 265 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 86; Fungi - 0; Plants - 153; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:-:20927962..20929825 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 45326.40 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.75 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.30 | ||||||||||||||||||||||||||||||||
| Length | 403 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKSVSTWALS FFSDELSRRA VSDCYLWTTA ISLLLILLLH IFFSTKFRFF TSAPSSSSSS SSSSSPSTES VPANSQSRIS KLVSDEDLKF LIENLEEETN 101: DSTEIWEHVI HKSNDRISYS AKRCKPKDGG GPMKYLSVTV FEGFSAEIVR DFYMDNDYRK LWDKTVVEHE QLQVDSNTGI EIGRTIKKFP LLTSREYVLA 201: WRLWQGKEKK FYCFTKECDH NMVPQQRKYV RVSYFRSGWR IRQVPGRNAC EIKMFHQENA GLNVEMAKLA FSKGIWSYVC KMENALCKYI ATSHRTQGPI 301: LSAVTLMKEV PSELETGTDN VTGSMETSSG EGVLSHVVAA KQKKKMRKPS TKLIAKGLVL VGGAICLSRG PSALGAKVAL AYLLTKLNKR GTSLNQTTQT 401: TTI |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)