AT5G35970.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: hydrolase activity, DNA binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Restriction endonuclease, type I, R subunit/Type III, Res subunit (InterPro:IPR006935), DEAD-like helicase, N-terminal (InterPro:IPR014001); BEST Arabidopsis thaliana protein match is: DNA-binding protein, putative (TAIR:AT2G03270.1); Has 6377 Blast hits to 5712 proteins in 1082 species: Archae - 188; Bacteria - 2376; Metazoa - 1211; Fungi - 1055; Plants - 600; Viruses - 0; Other Eukaryotes - 947 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:14119060..14123078 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 105054.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.83 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.16 | ||||||||||||||||||||||||||||||||||||
| Length | 961 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEAASSFLCR SIRIPSTTTA TAAFTFTRPP LNYVCVVGVR VFPTRKVFCS GVNGGSSVTK KKPRRKSNVS DKLRFKKIEK RNDNTESESL SVVEEPKNDK 101: ELSLRALNQN GDPLGRRDLG RNVVKWISQA MKAMASDFAT AEVQGEFSEL RQNVGSGLTF VIQAQPYLNA IPMPLGSEVI CLKACTHYPT LFDHFQRELR 201: DVLQDLERKN IMESWKESES WKLLKEIANS AQHREVARKA AQAKPVQGVL GMDSEKVKAI QERIDEFTSQ MSQLLQVERD TELEVTQEEL DVVPTPDESS 301: DSSKPIEFLV RHGDAPQELC DTICNLYAVS TSTGLGGMHL VLFKVGGNHR LPPTTLSPGD MVCIRVCDSR GAGATACTQG FVHNLGEDGC SIGVALESRH 401: GDPTFSKLFG KSVRIDRIHG LADALTYERN CEALMLLQKN GLQKKNPSIS VVATLFGDGE DITWLEQNDY VDWSEAELSD EPVSKLFDSS QRRAIALGVN 501: KKRPVMIVQG PPGTGKTGML KEVITLAVQQ GERVLVTAPT NAAVDNMVEK LLHLGLNIVR VGNPARISSA VASKSLGEIV NSKLASFRAE LERKKSDLRK 601: DLRQCLRDDV LAAGIRQLLK QLGKTLKKKE KETVKEILSN AQVVFATNIG AADPLIRRLE TFDLVVIDEA GQSIEPSCWI PILQGKRCIL SGDPCQLAPV 701: VLSRKALEGG LGVSLLERAA SLHDGVLATK LTTQYRMNDV IAGWASKEMY GGWLKSAPSV ASHLLIDSPF VKATWITQCP LVLLDTRMPY GSLSVGCEER 801: LDPAGTGSLY NEGEADIVVN HVISLIYAGV SPMAIAVQSP YVAQVQLLRE RLDDFPVADG VEVATIDSFQ GREADAVIIS MVRSNNLGAV GFLGDSRRMN 901: VAITRARKHV AVVCDSSTIC HNTFLARLLR HIRYFGRVKH ADPGSLGGSG LGLDPMLPYL G |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)