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AT5G53280.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : plastid division1
Curator
Summary (TAIR10)
An integral outer envelope membrane protein (as its homolog PDV2), component of the plastid division machinery. Similar to ARC5, PDV1 localized to a discontinuous ring at the division site in wild-type plants. PDV1 and PDV2 are required for localization of ARC5 at the chloroplast division site. Topological analysis showed that the large N-terminal region of PDV1 upstream of the transmembrane helix bearing a putative coiled-coil domain is exposed to the cytosol. Mutation of the conserved PDV1 C-terminal Gly residue did not block PDV1 insertion into the outer envelope membrane but did abolish its localization to the division site.
Computational
Description (TAIR10)
PLASTID DIVISION1 (PDV1); BEST Arabidopsis thaliana protein match is: plastid division2 (TAIR:AT2G16070.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:20654DNASU:835409eggNOG:ENOG410IJK0eggNOG:ENOG410YDZK
EMBL:AB013388EMBL:AB252216EMBL:AB252218EMBL:AK221634
EMBL:AY087298EMBL:BT024498EMBL:CP002688EnsemblPlants:AT5G53280
EnsemblPlants:AT5G53280.1entrez:835409GeneID:835409Genevisible:Q9FK13
GO:GO:0009707GO:GO:0010020GO:GO:0016021Gramene:AT5G53280.1
hmmpanther:PTHR33600hmmpanther:PTHR33600:SF4HOGENOM:HOG000237665InParanoid:Q9FK13
KEGG:ath:AT5G53280OMA:RSHFLNSPaxDb:Q9FK13Pfam:Q9FK13
PhylomeDB:Q9FK13PRO:PR:Q9FK13Proteomes:UP000006548RefSeq:NP_200140.1
STRING:3702.AT5G53280.1TAIR:AT5G53280tair10-symbols:PDV1UniGene:At.29561
UniProt:Q9FK13
Coordinates (TAIR10) chr5:+:21607586..21609080
Molecular Weight (calculated) 30677.20 Da
IEP (calculated) 6.98
GRAVY (calculated) -0.55
Length 272 amino acids
Sequence (TAIR10)
(BLAST)
001: MGEMEIEEIE AVLEKIWDLH DKLSDEIHLI SKSHFLKSVK PSNRSEKRKN PHGNSGEDKR PGYVFIKGFA VDDNDSTIQE AKSLNAIRTA LENLEDQLEF
101: FHTIHTQQRT EKDVAIARLE QSRILLAMRL AEHHGKNYGV LEEALAFVGS IKSNSHYVSP DHLYDSSRNP DGANSIPDGI ESNFVINAFA STFGFAKRAL
201: GFNHVKGVLG NAAIFAISVV AMLHLHQVAT SEHHLQKKED RFYRSQQRKT YGRDKSSADR SLDHLDVMMA RG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)