AT4G32600.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.998 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RING/U-box superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G80400.1); Has 7180 Blast hits to 7160 proteins in 223 species: Archae - 0; Bacteria - 6; Metazoa - 2398; Fungi - 545; Plants - 2870; Viruses - 33; Other Eukaryotes - 1328 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:15724010..15725737 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 49913.10 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.74 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.24 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 453 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGVSLLKQQH RITNQADTFS RFMERSPENN LSRNEHIIID IPRNAAIASS SSSHDRISNV LEPLQHEEER PSTVSPMAAP QPATATASSS SSMRSNPRSV 101: RRRRSPLNSG LWISIELFLT VGQIIAAIVV LSLSKHEHPR APLFTWIVGY ACGCVATLPL LYWRYYHSNQ ASEQDSGQHR PNLNVAAGPF AFSISRTSEA 201: DGRQTNTTSS RGSRYPGFIS AARLKVIVEY FKMALDCFFA VWFVVGNVWI FGGHSSAAEA PNLYRLCLVF LTFSCIGYAM PFILCTTICC CLPCIISILG 301: YREDLTQPRG ATPESINALP THKFKLKKSR SNGDDNGSST SEGGVVAAGT DNERAISGED AVCCICLAKY ANNEELRELP CSHFFHKECV DKWLKINASC 401: PLCKSEVGEK NSDLTSQGIL TSLSSGENDN HQQQQQQQRS ELRVENGLAN NVI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)