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AT2G01260.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF789)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF789); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF789 (InterPro:IPR008507); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF789) (TAIR:AT1G15030.1); Has 265 Blast hits to 263 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 263; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IICIeggNOG:ENOG4111G6NEMBL:AC006200EMBL:AK228022
EMBL:BT008310EMBL:CP002685EnsemblPlants:AT2G01260EnsemblPlants:AT2G01260.1
entrez:814653ExpressionAtlas:Q9ZU41GeneID:814653Gramene:AT2G01260.1
hmmpanther:PTHR31343hmmpanther:PTHR31343:SF8HOGENOM:HOG000237909InterPro:IPR008507
OMA:MFEYLERPfam:PF05623PhylomeDB:Q9ZU41PIR:E84422
Proteomes:UP000006548RefSeq:NP_565257.1TAIR:AT2G01260UniGene:At.21874
UniProt:Q9ZU41
Coordinates (TAIR10) chr2:-:135494..137504
Molecular Weight (calculated) 41645.40 Da
IEP (calculated) 5.78
GRAVY (calculated) -0.53
Length 369 amino acids
Sequence (TAIR10)
(BLAST)
001: MLGAGFQLTR GRHGDDPFYT SAKTRRANQR IDQLRRAQSD VSNVPSSAPS PHKQQLEPSD LSSSNLDRFL ESVTPSVPAQ FLSKTLLRER RADDDYNKLV
101: PYFVLGDIWD SFAEWSAYGT GVPLVLNNNK DRVIQYYVPS LSAIQIYAHS HALDSSLKSR RPGDSSDSDF RDSSSDVSSD SDSERVSARV DCISLRDQHQ
201: EDSSSDDGEP LGSQGRLMFE YLERDLPYIR EPFADKVLDL AAQFPELMTL RSCDLLRSSW FSVAWYPIYR IPTGPTLKDL DACFLTYHSL HTSFGGEGSE
301: QSMSLTQPRE SEKMSLPVFG LASYKFRGSL WTPIGGSEHQ LVNSLFQAAD KWLHSCHVSH PDFLFFCRR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)