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AT1G05900.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:19372224 (2009): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : endonuclease III 2
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
endonuclease III 2 (NTH2); CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), Helix-hairpin-helix DNA-binding motif, class 1 (InterPro:IPR003583), Endonuclease III, conserved site-2 (InterPro:IPR004036), Helix-hairpin-helix motif (InterPro:IPR000445), HhH-GPD domain (InterPro:IPR003265); BEST Arabidopsis thaliana protein match is: DNA glycosylase superfamily protein (TAIR:AT2G31450.1); Has 11954 Blast hits to 11950 proteins in 2636 species: Archae - 340; Bacteria - 7920; Metazoa - 127; Fungi - 171; Plants - 73; Viruses - 0; Other Eukaryotes - 3323 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1794-MONOMEREC:3.2.2.-EC:4.2.99.18eggNOG:COG0177
eggNOG:KOG1921EMBL:AC009999EMBL:AF410268EMBL:AK316958
EMBL:AY143860EMBL:CP002684EnsemblPlants:AT1G05900EnsemblPlants:AT1G05900.1
EnsemblPlants:AT1G05900.2entrez:837100ExpressionAtlas:B9DFZ0Gene3D:1.10.1670.10
Gene3D:1.10.340.30GeneID:837100Genevisible:B9DFZ0GO:GO:0000703
GO:GO:0003677GO:GO:0003906GO:GO:0005634GO:GO:0006284
GO:GO:0006285GO:GO:0019104GO:GO:0042644GO:GO:0046872
GO:GO:0051539HAMAP:MF_03183hmmpanther:PTHR10359HOGENOM:HOG000252209
InParanoid:B9DFZ0InterPro:IPR000445InterPro:IPR003265InterPro:IPR003651
InterPro:IPR004036InterPro:IPR011257InterPro:IPR023170InterPro:IPR030841
iPTMnet:B9DFZ0KEGG:ath:AT1G05900KO:K10773OMA:KERRFYV
PaxDb:B9DFZ0Pfam:PF00633Pfam:PF00730PhylomeDB:B9DFZ0
PIR:A86194PRIDE:B9DFZ0PRO:PR:B9DFZ0PROSITE:PS01155
ProteinModelPortal:B9DFZ0Proteomes:UP000006548Reactome:R-ATH-110329Reactome:R-ATH-110357
RefSeq:NP_563752.1RefSeq:NP_973767.1scanprosite:PS01155SMART:SM00478
SMART:SM00525SMR:B9DFZ0STRING:3702.AT1G05900.2SUPFAM:SSF48150
TAIR:AT1G05900tair10-symbols:ATNTH2tair10-symbols:NTH2UniGene:At.26529
UniProt:Q94EJ4
Coordinates (TAIR10) chr1:+:1786896..1789037
Molecular Weight (calculated) 34496.60 Da
IEP (calculated) 9.75
GRAVY (calculated) -0.39
Length 314 amino acids
Sequence (TAIR10)
(BLAST)
001: MILTGAASTF PIVARVLNAM NRRMYAATTL SSAKSISAES LNLRSDSNSE AAHGASESET RVSLRKKRIK QDDLEPVKKC SARETKARKD MCGLPDIEDS
101: PYKKTNGTAS SRTRKLNSYI KSTEASPSAS SIKTAGLGIP PENWEKVLEG IRKMKPSEEA PVNAVECDRT GSFLPPKERR FYVLIGTLLS SQTKEHITGA
201: AVERLHQNGL LTPEAIDKAD ESTIKELIYP VGFYTRKATN VKKVAKICLM EYDGDIPRTL EELLSLPGVG PKIAHLVLHV AWNDVQGICV DTHVHRICNR
301: LGWVSKPGTK QVLL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)