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AT5G52030.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
peroxisome 0.786
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : TraB family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
TraB family protein; CONTAINS InterPro DOMAIN/s: Pheromone shutdown-related, TraB (InterPro:IPR002816); BEST Arabidopsis thaliana protein match is: TraB family protein (TAIR:AT1G05270.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1916eggNOG:KOG2860EMBL:CP002688EnsemblPlants:AT5G52030
EnsemblPlants:AT5G52030.1entrez:835278ExpressionAtlas:F4KER9GeneID:835278
Gramene:AT5G52030.1hmmpanther:PTHR21530hmmpanther:PTHR21530:SF1InterPro:IPR002816
KEGG:ath:AT5G52030PaxDb:F4KER9Pfam:PF01963PRIDE:F4KER9
Proteomes:UP000006548RefSeq:NP_200016.2STRING:3702.AT5G52030.2TAIR:AT5G52030
UniGene:At.29644UniProt:F4KER9
Coordinates (TAIR10) chr5:+:21128819..21130034
Molecular Weight (calculated) 28174.80 Da
IEP (calculated) 7.50
GRAVY (calculated) -0.07
Length 258 amino acids
Sequence (TAIR10)
(BLAST)
001: MYTSSVGGEV DQNLKSGELS LTGTGFLGAV GRSLDLGGQT ALALRLLLAV FSSKLSSVAD RPFGDEFRAA RKASEEVGAQ LVLGDRPIEI TLQRAWNSLK
101: WGEKFNLVMA VTRVITSSSG ISAAELKEQE TDENSGSLQL YERLSFSYPA LLMPLIHERD TYLAWSLKRS KAVNGCKTVV GVIGKGHMNG VIYALVSDSG
201: DLRFRDLVGR GDSYNGGTGT TSNGWIQKVL KSFVRDTIIG FLLWELYEQY LMMNQNLS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)