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AT5G08710.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Regulator of chromosome condensation (RCC1) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Regulator of chromosome condensation (RCC1) family protein; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408); BEST Arabidopsis thaliana protein match is: Regulator of chromosome condensation (RCC1) family protein (TAIR:AT5G63860.1); Has 22297 Blast hits to 6326 proteins in 481 species: Archae - 85; Bacteria - 2816; Metazoa - 7462; Fungi - 1554; Plants - 2765; Viruses - 0; Other Eukaryotes - 7615 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5184eggNOG:KOG1426EMBL:AK118882EMBL:BT005498
EMBL:CP002688EnsemblPlants:AT5G08710EnsemblPlants:AT5G08710.1entrez:830771
Gene3D:2.130.10.30GeneID:830771Gramene:AT5G08710.1hmmpanther:PTHR22870
HOGENOM:HOG000006005InterPro:IPR000408InterPro:IPR009091KEGG:ath:AT5G08710
OMA:RAVHISCPfam:PF00415Pfscan:PS50012PhylomeDB:Q8GWF2
PRINTS:PR00633PROSITE:PS00626PROSITE:PS50012Proteomes:UP000006548
RefSeq:NP_680156.2scanprosite:PS00626SMR:Q8GWF2STRING:3702.AT5G08710.1
SUPFAM:SSF50985TAIR:AT5G08710UniGene:At.45869UniProt:Q8GWF2
Coordinates (TAIR10) chr5:-:2834858..2837866
Molecular Weight (calculated) 45561.70 Da
IEP (calculated) 7.02
GRAVY (calculated) -0.07
Length 434 amino acids
Sequence (TAIR10)
(BLAST)
001: MLTRAIGRVR IPVSRIQGSN CTSGLLKDSK LGPIGVCCSR WVSSESGKRF AAMWGSGDYG RLGLGNLDSQ WTPAVCSALS DHSITAVACG GAHTLFLTET
101: RRVFATGLND CGQLGVSDVK SHAMDPLEVS GLDKDILHIS AGYYHSAAIT VDGELYMWGK NSSGQLGLGK KAARVVRVPT KVEALHGITI QSVALGSEHS
201: VAVTDGGEVL SWGGGGSGRL GHGHQSSLFG ILRSNSEFTP RLIKELEGIK VTNVAAGLLH SACTDENGSA FMFGEKSINK MGFGGVRNAT TPSIISEVPY
301: AEEVACGGYH TCVVTRGGEL YTWGSNENGC LGTDSTYVSH SPVRVEGPFL ESTVSQVSCG WKHTAAISDN NVFTWGWGGS HGTFSVDGHS SGGQLGHGSD
401: VDYARPAMVD LGKNVRAVHI SCGFNHTAAV LEHF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)