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AT1G73650.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31541795 (2020): plasma membrane
  • PMID:30962257 (2019): plastid
  • PMID:30447334 (2019): plasma membrane
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25641898 (2015): plasma membrane
  • PMID:23990937 (2013): plasma membrane
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:22430844 (2012): Golgi
  • PMID:20843791 (2010): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:17644812 (2007): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:15060130 (2004): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF1295)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FUNCTIONS IN: oxidoreductase activity, acting on the CH-CH group of donors; INVOLVED IN: lipid metabolic process; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal (InterPro:IPR001104), Protein of unknown function DUF1295 (InterPro:IPR010721); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1295) (TAIR:AT1G18180.1); Has 1888 Blast hits to 1888 proteins in 328 species: Archae - 0; Bacteria - 488; Metazoa - 78; Fungi - 114; Plants - 114; Viruses - 0; Other Eukaryotes - 1094 (source: NCBI BLink).
Protein Annotations
eggNOG:COG3752eggNOG:KOG4650EMBL:CP002684EnsemblPlants:AT1G73650
EnsemblPlants:AT1G73650.1entrez:843699ExpressionAtlas:A8MQG9GeneID:843699
GO:GO:0005737GO:GO:0006629GO:GO:0016021GO:GO:0016627
Gramene:AT1G73650.1hmmpanther:PTHR32251hmmpanther:PTHR32251:SF15HOGENOM:HOG000245961
InterPro:IPR001104InterPro:IPR010721PaxDb:A8MQG9Pfam:PF06966
Pfscan:PS50244PRIDE:A8MQG9PROSITE:PS50244ProteinModelPortal:A8MQG9
Proteomes:UP000006548RefSeq:NP_849882.2STRING:3702.AT1G73650.3TAIR:AT1G73650
TMHMM:TMhelixUniGene:At.17986UniProt:A8MQG9
Coordinates (TAIR10) chr1:-:27688449..27689606
Molecular Weight (calculated) 23731.80 Da
IEP (calculated) 9.31
GRAVY (calculated) 0.12
Length 208 amino acids
Sequence (TAIR10)
(BLAST)
001: MRILQWGEDR RFDEQRGNIV RLIIFWTLQA VWVWTVSLPL TLVNASDGGG SLKPADVIGW TMWVFGFLIE AAADQQKLSF KNSPENRGKW CDVGVWKYSR
101: HPNYFGEMLL WWGIFVAASP VLEGAEYLVI FGPLFLTLLL LFVSGIPLLE ASADKKHGNS GAYRSYKKTT SPLILFPRGV YGNLPGWFKT VFLFEFPFYS
201: RNLPQELG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)