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AT3G12010.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:21433285 (2011): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: sperm cell, cultured cell; CONTAINS InterPro DOMAIN/s: Colon cancer-associated Mic1-like (InterPro:IPR009755); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410YC1KeggNOG:KOG2377EMBL:CP002686EnsemblPlants:AT3G12010
EnsemblPlants:AT3G12010.1entrez:820375Gene3D:2.130.10.10GeneID:820375
Gramene:AT3G12010.1hmmpanther:PTHR12897InParanoid:F4J8L1InterPro:IPR009755
InterPro:IPR015943InterPro:IPR017986iPTMnet:F4J8L1KEGG:ath:AT3G12010
OMA:CFQGDQPPaxDb:F4J8L1Pfam:PF07035PRIDE:F4J8L1
ProteinModelPortal:F4J8L1Proteomes:UP000006548RefSeq:NP_187808.3SMR:F4J8L1
STRING:3702.AT3G12010.1SUPFAM:SSF50978TAIR:AT3G12010UniGene:At.39656
UniProt:F4J8L1
Coordinates (TAIR10) chr3:+:3821337..3825537
Molecular Weight (calculated) 76416.30 Da
IEP (calculated) 5.54
GRAVY (calculated) -0.10
Length 682 amino acids
Sequence (TAIR10)
(BLAST)
001: MNSSAQAGVG SGALSHVYIH HPSLRCNIPE SNGLFYDDAN RLLICTTSSQ VFSWETSPFN PDVPPSVDSI SEGPILSIRF SLDKKAIAVQ RSDCEIQLFN
101: RETKQILNHK CKAGSESILG FFWSDSPLCD LAIVKTSGMD LFACDSMLNS LRLVETKKAN VNWYIYTHET RLVLLASGLQ CKTFNGFQLS TAGVVRLPRF
201: EMTMARSESN SKPILSAGDL HLVTVYGRIY CLQVDREAML LHLYRFYRDA VVQQGSLPIY SSKLSVNVVD NLLLVHQIDA KVVIIYDLFV DSRAPVSAPL
301: PLLWRGYQVS ETSSQAVNKE IESSESSTSN ENIVMYEDGW TFLVPDLILD QTNKVLWKIH LDLEAISASS SDRTSLLEFL QRRKLEANKA KQLCLGIARA
401: IILERRPATQ VTQAIDVLVT AYSYSVKAGT YKEIKNENAT ASTPTPGASP DSERHRQSGS NIDEEVEMNL SSGSQENMFC ADEQQESQLS SPAISPDELY
501: KFVFTSVEEM MVEESEYLVA IITEFLRSIS AEKLKVDLNI YVMTIKLLAY SKRFAELSLF TTNKIIEPSK EVAFQLLDSG RQNIRVRKLG LDMLRQLSLH
601: HDYISSLVQD GYYLEALRYA QKHKVTSVRS SMFLEAAFAS NDMQHLAAIL RVLSELIPGF KETSEYYTFY GLLNDTSSSV AV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)