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AT4G10430.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.853
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : TMPIT-like protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
TMPIT-like protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: TMPIT-like (InterPro:IPR012926); BEST Arabidopsis thaliana protein match is: TMPIT-like protein (TAIR:AT1G33230.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XT6GeggNOG:KOG4758EMBL:AY059867EMBL:AY093326
EMBL:CP002687EnsemblPlants:AT4G10430EnsemblPlants:AT4G10430.1EnsemblPlants:AT4G10430.3
entrez:826635ExpressionAtlas:Q93XX0GeneID:826635GO:GO:0016021
Gramene:AT4G10430.1Gramene:AT4G10430.3hmmpanther:PTHR21433HOGENOM:HOG000264974
IntAct:Q93XX0InterPro:IPR012926KEGG:ath:AT4G10430OMA:ARCMLVD
PANTHER:PTHR21433Pfam:PF07851PhylomeDB:Q93XX0Proteomes:UP000006548
RefSeq:NP_567356.1RefSeq:NP_974529.1STRING:3702.AT4G10430.1TAIR:AT4G10430
TMHMM:TMhelixUniGene:At.3020UniProt:Q93XX0
Coordinates (TAIR10) chr4:-:6455110..6457996
Molecular Weight (calculated) 39897.30 Da
IEP (calculated) 9.87
GRAVY (calculated) 0.01
Length 347 amino acids
Sequence (TAIR10)
(BLAST)
001: MEVEEEVKQI IDEVKELHDS AASFISSSSQ QELSLRQKAS AVDSSIRRLH STIVSNKNLD PKLVEKLEED LHRARCMLVD GETSSFLPSK PQGRFVRMFC
101: GPVNVRALRK DVQLKVKEEY NRYRDKTALL FLFFPATLLI LRSYYWGGCL PAFPVQLYEA WLLFLYAGLA MRENILRANG SDIRPWWLYH HYCAMAMALV
201: SLTWEIKGQP NCVQKQRGVH LFLQWAMMQG VAMLLQNRYQ RQRLYTRIAL GKAKRMDVVW GETAGVDGQL WLLCPILFIL QVFEAYVGLL LLRKTVTGVV
301: NEWQVMVCGI LLVVMAVGNF INTVETLMAK SRVKAKMKRS KSRAELN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)