suba logo
AT4G14240.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
vacuole 0.869
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30962257 (2019): plastid
  • PMID:25641898 (2015): plasma membrane
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : CBS domain-containing protein with a domain of unknown function (DUF21)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF21 (InterPro:IPR002550), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: CBS domain-containing protein with a domain of unknown function (DUF21) (TAIR:AT4G14230.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1253eggNOG:KOG2118EMBL:AK175696EMBL:AK175756
EMBL:AK176131EMBL:AK176768EMBL:AL161538EMBL:BT015402
EMBL:CP002687EMBL:Z97335EnsemblPlants:AT4G14240EnsemblPlants:AT4G14240.1
entrez:827065GeneID:827065Genevisible:Q67XQ0GO:GO:0016021
hmmpanther:PTHR12064hmmpanther:PTHR12064:SF32HOGENOM:HOG000183089InParanoid:Q67XQ0
InterPro:IPR000644InterPro:IPR002550iPTMnet:Q67XQ0KEGG:ath:AT4G14240
KO:K16302OMA:PSKHQVNPaxDb:Q67XQ0Pfam:PF01595
Pfam:Q67XQ0Pfscan:PS51371PhylomeDB:Q67XQ0PIR:A71404
PRIDE:Q67XQ0PRO:PR:Q67XQ0PROSITE:PS51371ProteinModelPortal:Q67XQ0
Proteomes:UP000006548RefSeq:NP_001031633.2RefSeq:NP_193160.3SMR:Q67XQ0
STRING:3702.AT4G14240.1SUPFAM:SSF54631TAIR:AT4G14240TMHMM:TMhelix
UniGene:At.50339UniProt:Q67XQ0
Coordinates (TAIR10) chr4:-:8204712..8207273
Molecular Weight (calculated) 53584.90 Da
IEP (calculated) 5.79
GRAVY (calculated) 0.06
Length 494 amino acids
Sequence (TAIR10)
(BLAST)
001: MHLINAVAAA RILSGIGQSN GNNGGEAIPF GSFEWITYAG ISCFLVLFAG IMSGLTLGLM SLGLVELEIL QRSGTPNEKK QAAAIFPVVQ KQHQLLVTLL
101: LCNAMAMEGL PIYLDKLFNE YVAIILSVTF VLAFGEVIPQ AICTRYGLAV GANFVWLVRI LMTLCYPIAF PIGKILDLVL GHNDALFRRA QLKALVSIHS
201: QEAGKGGELT HDETTIISGA LDLTEKTAQE AMTPIESTFS LDVNSKLDWE AMGKILARGH SRVPVYSGNP KNVIGLLLVK SLLTVRPETE TLVSAVCIRR
301: IPRVPADMPL YDILNEFQKG SSHMAAVVKV KGKSKVPPST LLEEHTDESN DSDLTAPLLL KREGNHDNVI VTIDKANGQS FFQNNESGPH GFSHTSEAIE
401: DGEVIGIITL EDVFEELLQE EIVDETDEYV DVHKRIRVAA AAAASSIARA PSSRKLLAQK GTGGQNKQGQ TNKVPGQEQD KMLGTITEPI RRNN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)