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AT1G06060.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 0.587
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : LisH and RanBPM domains containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
LisH and RanBPM domains containing protein; CONTAINS InterPro DOMAIN/s: Ran binding protein, CRA domain (InterPro:IPR019589), CTLH, C-terminal LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594), Ran binding protein-like, CRA domain (InterPro:IPR013144); BEST Arabidopsis thaliana protein match is: SPla/RYanodine receptor (SPRY) domain-containing protein (TAIR:AT1G35470.2); Has 872 Blast hits to 770 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 465; Fungi - 136; Plants - 208; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).
Protein Annotations
DNASU:837115eggNOG:ENOG410XRG3eggNOG:KOG2659EMBL:AC024174
EMBL:AK227477EMBL:AY085516EMBL:BT004777EMBL:CP002684
EnsemblPlants:AT1G06060EnsemblPlants:AT1G06060.1entrez:837115GeneID:837115
Gramene:AT1G06060.1hmmpanther:PTHR12864HOGENOM:HOG000005656InterPro:IPR006594
InterPro:IPR006595InterPro:IPR013144InterPro:IPR024964KEGG:ath:AT1G06060
OMA:SYLLHNCPfam:PF10607Pfscan:PS50896Pfscan:PS50897
PhylomeDB:Q9LNE1PIR:G86195PROSITE:PS50896PROSITE:PS50897
Proteomes:UP000006548RefSeq:NP_563758.1SMART:SM00667SMART:SM00668
SMART:SM00757STRING:3702.AT1G06060.1TAIR:AT1G06060UniGene:At.42357
UniGene:At.70161UniProt:Q9LNE1
Coordinates (TAIR10) chr1:+:1833071..1834516
Molecular Weight (calculated) 24557.50 Da
IEP (calculated) 6.09
GRAVY (calculated) -0.41
Length 213 amino acids
Sequence (TAIR10)
(BLAST)
001: MDPRQFEHTV VADNDIHSIV MSYLLHNCFN ETADSLASST GVKQPAIDRD NMERRKQIIH FILERKALKA FELTEQLAQD LLEKNKDLQF DLLCLHFVEL
101: ICAGNCTEAL KFGKTRLAPF GKVKKYVEKL EDVMALLAYE DPEKSPMFHL LSSEYRQQVA DNLNRTILEH TNHPSYTPME RIIQQVTVVR QYLTEENGKD
201: AFPPFSLKDS LKG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)