AT1G06060.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:golgi 0.587 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : LisH and RanBPM domains containing protein | ||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
LisH and RanBPM domains containing protein; CONTAINS InterPro DOMAIN/s: Ran binding protein, CRA domain (InterPro:IPR019589), CTLH, C-terminal LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594), Ran binding protein-like, CRA domain (InterPro:IPR013144); BEST Arabidopsis thaliana protein match is: SPla/RYanodine receptor (SPRY) domain-containing protein (TAIR:AT1G35470.2); Has 872 Blast hits to 770 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 465; Fungi - 136; Plants - 208; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:+:1833071..1834516 | ||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 24557.50 Da | ||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 6.09 | ||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.41 | ||||||||||||||||||||||||||||||||||||||||
Length | 213 amino acids | ||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MDPRQFEHTV VADNDIHSIV MSYLLHNCFN ETADSLASST GVKQPAIDRD NMERRKQIIH FILERKALKA FELTEQLAQD LLEKNKDLQF DLLCLHFVEL 101: ICAGNCTEAL KFGKTRLAPF GKVKKYVEKL EDVMALLAYE DPEKSPMFHL LSSEYRQQVA DNLNRTILEH TNHPSYTPME RIIQQVTVVR QYLTEENGKD 201: AFPPFSLKDS LKG |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)