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AT4G05000.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Vacuolar protein sorting-associated protein VPS28 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
VPS28-2; CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting-associated, VPS28, N-terminal (InterPro:IPR017898), Vacuolar protein sorting-associated, VPS28, C-terminal (InterPro:IPR017899), Vacuolar protein sorting-associated, VPS28 (InterPro:IPR007143); BEST Arabidopsis thaliana protein match is: vacuolar protein sorting-associated protein 28 homolog 1 (TAIR:AT4G21560.3); Has 389 Blast hits to 388 proteins in 178 species: Archae - 0; Bacteria - 0; Metazoa - 134; Fungi - 146; Plants - 72; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).
Protein Annotations
BioGrid:11153DNASU:825842eggNOG:ENOG4111IQ4eggNOG:KOG3284
EMBL:AF162444EMBL:AK229295EMBL:AL161502EMBL:BT015071
EMBL:BT015727EMBL:CP002687EnsemblPlants:AT4G05000EnsemblPlants:AT4G05000.1
EnsemblPlants:AT4G05000.2entrez:825842GeneID:825842Genevisible:Q9S9T7
GO:GO:0000813GO:GO:0032403GO:GO:0043328Gramene:AT4G05000.1
Gramene:AT4G05000.2hmmpanther:PTHR12937HOGENOM:HOG000203818InParanoid:Q9S9T7
IntAct:Q9S9T7InterPro:IPR007143InterPro:IPR017898InterPro:IPR017899
KEGG:ath:AT4G05000KO:K12184OMA:KMFSRDHPANTHER:PTHR12937
PaxDb:Q9S9T7Pfam:PF03997Pfam:Q9S9T7Pfscan:PS51310
Pfscan:PS51313PhylomeDB:Q9S9T7PIR:H85062PIRSF:PIRSF017535
PRIDE:Q9S9T7PRO:PR:Q9S9T7PROSITE:PS51310PROSITE:PS51313
ProteinModelPortal:Q9S9T7Proteomes:UP000006548RefSeq:NP_567281.2RefSeq:NP_974513.1
SMR:Q9S9T7STRING:3702.AT4G05000.1SUPFAM:0053163SUPFAM:SSF140111
TAIR:AT4G05000tair10-symbols:VPS28-2UniGene:At.33930UniGene:At.72595
UniProt:Q9S9T7
Coordinates (TAIR10) chr4:+:2563953..2564585
Molecular Weight (calculated) 23690.40 Da
IEP (calculated) 5.14
GRAVY (calculated) -0.25
Length 210 amino acids
Sequence (TAIR10)
(BLAST)
001: MMEVKLWNDK REREMYENFA ELFAIIKATE KLEKAYIRDL INPSEYESEC QKLIVHFKTL SATLKDTVPN IERFADTYKM DCPAALYRLV TSGLPATVEH
101: RATVAASTSN SASIVAECVQ NFITSMDSLK LNMVAVDQVY PLLSDLSASL NKLSILPPDF EGKTKMKEWL SRLSKMGAAD ELTEQQSRQL HFDLESSYNS
201: FMAALPKAGN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)