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AT5G63460.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : SAP domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SAP domain-containing protein; FUNCTIONS IN: DNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage; CONTAINS InterPro DOMAIN/s: DNA-binding SAP (InterPro:IPR003034), Ubiquitin ligase, Det1/DDB1-complexing (InterPro:IPR018276); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
EMBL:AK176712EMBL:AK176839EMBL:BT014767EMBL:BT015747
EMBL:CP002688EnsemblPlants:AT5G63460EnsemblPlants:AT5G63460.1entrez:836465
ExpressionAtlas:Q6IDA6Gene3D:1.10.720.30GeneID:836465Gramene:AT5G63460.1
hmmpanther:PTHR12381IntAct:Q6IDA6InterPro:IPR003034InterPro:IPR018276
Pfam:PF02037Pfam:PF10172Pfscan:PS50800PhylomeDB:Q6IDA6
PROSITE:PS50800Proteomes:UP000006548RefSeq:NP_201151.2SMART:SM00513
SMR:Q6IDA6SUPFAM:SSF68906TAIR:AT5G63460UniGene:At.43508
UniProt:Q6IDA6
Coordinates (TAIR10) chr5:-:25413605..25415399
Molecular Weight (calculated) 17553.50 Da
IEP (calculated) 10.59
GRAVY (calculated) -0.92
Length 162 amino acids
Sequence (TAIR10)
(BLAST)
001: MEASSSQPSD SSDQTASKFL SDLPSRGFLS STVVSSNPGS LRVYICEHDT SPPEGQLIKT NQQNILIRSL LLKKQKGESS SKDSKGTAED GPKKRAANRA
101: LDDRSSAKRA ANASRQEGSS SRTGERDFQS LTVEKLRAML KEKGLPTKGR KDELIARLKS AN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)