AT5G48680.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.997 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Sterile alpha motif (SAM) domain-containing protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Sterile alpha motif (SAM) domain-containing protein; CONTAINS InterPro DOMAIN/s: Sterile alpha motif (InterPro:IPR001660), Sterile alpha motif homology (InterPro:IPR010993), Sterile alpha motif, type 1 (InterPro:IPR021129); BEST Arabidopsis thaliana protein match is: Sterile alpha motif (SAM) domain-containing protein (TAIR:AT3G07170.1); Has 493 Blast hits to 490 proteins in 77 species: Archae - 0; Bacteria - 17; Metazoa - 313; Fungi - 0; Plants - 146; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:19744725..19746053 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 23302.70 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.55 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.99 | ||||||||||||||||||||||||||||||||
| Length | 206 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MYSDLVVAET KISKTFKNRL NGGSGDFSSR GKQQQVTRKR GRQDDDKWEH DLFEDDDEPR LSKRRVDPKD LRLKLQKKRH GSQIGGRVFS VSVADLRDKL 101: SRTVNPQTKN SKREAVRPAI KKVSVGTKPE TRAAPNRATK KDPQQNDASV DSFLESLGLE KYSTAFQVEE VDMDALRHMT DDDLKALLIP MGPRKKILLA 201: LGDNRG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)