suba logo
AT3G12130.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : KH domain-containing protein / zinc finger (CCCH type) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
KH domain-containing protein / zinc finger (CCCH type) family protein; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), K Homology (InterPro:IPR004087), K Homology, type 1, subgroup (InterPro:IPR018111), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: KH domain-containing protein / zinc finger (CCCH type) family protein (TAIR:AT5G06770.1); Has 1306 Blast hits to 1045 proteins in 139 species: Archae - 0; Bacteria - 4; Metazoa - 726; Fungi - 40; Plants - 423; Viruses - 0; Other Eukaryotes - 113 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IU2MeggNOG:ENOG41125A2EMBL:AC069473EMBL:AK227373
EMBL:AP002063EMBL:AY085746EMBL:BT025032EMBL:CP002686
EnsemblPlants:AT3G12130EnsemblPlants:AT3G12130.1entrez:820388Gene3D:3.30.1370.10
Gene3D:4.10.1000.10GeneID:820388Genevisible:Q9C7C3GO:GO:0003677
GO:GO:0003700GO:GO:0003723GO:GO:0006355GO:GO:0046872
Gramene:AT3G12130.1hmmpanther:PTHR10288hmmpanther:PTHR10288:SF5HOGENOM:HOG000238868
InParanoid:Q9C7C3InterPro:IPR000571InterPro:IPR004087InterPro:IPR004088
KEGG:ath:AT3G12130OMA:RAPSSYMPaxDb:Q9C7C3Pfam:PF00013
Pfam:PF00642Pfam:Q9C7C3Pfscan:PS50084Pfscan:PS50103
PhylomeDB:Q9C7C3PRIDE:Q9C7C3PRO:PR:Q9C7C3PROSITE:PS50084
PROSITE:PS50103ProteinModelPortal:Q9C7C3Proteomes:UP000006548RefSeq:NP_566412.1
SMART:SM00322SMART:SM00356SMR:Q9C7C3STRING:3702.AT3G12130.1
SUPFAM:SSF54791SUPFAM:SSF90229TAIR:AT3G12130UniGene:At.27694
UniProt:Q9C7C3
Coordinates (TAIR10) chr3:-:3864486..3866406
Molecular Weight (calculated) 25953.60 Da
IEP (calculated) 9.98
GRAVY (calculated) -0.62
Length 248 amino acids
Sequence (TAIR10)
(BLAST)
001: MDTRKRGRPE AGSFNSNGGG YKKSKQEMES YSTGLGSKSK PCTKFFSTSG CPFGENCHFL HYVPGGYNAV SQMTNMGPPI PQVSRNMQGS GNGGRFSGRG
101: ESGPGHVSNF GDSATARFSV DASLAGAIIG KGGVSSKQIC RQTGVKLSIQ DHERDPNLKN IVLEGTLEQI SEASAMVKDL IGRLNSAAKK PPGGGLGGGG
201: GMGSEGKPHP GSNFKTKICE RFSKGNCTFG DRCHFAHGEA ELRKSGIV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)