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AT3G05210.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : nucleotide repair protein, putative
Curator
Summary (TAIR10)
encodes a homolog of human ERCC1 protein (yeast RAD10), which is a DNA repair endonuclease. Mutants are sensitive to UV-B and gamma radiation (G2 cell cycle phase arrest) and are defective in dark-repair of pyrimidine pyrimidone dimers. This protein incises the 5' end of damaged DNA, similar to ERCC1/RAD10.
Computational
Description (TAIR10)
ERCC1; FUNCTIONS IN: 5'-flap endonuclease activity; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-hairpin-helix DNA-binding motif, class 1 (InterPro:IPR003583), DNA repair protein rad10 (InterPro:IPR004579), RuvA domain 2-like (InterPro:IPR010994); Has 658 Blast hits to 452 proteins in 188 species: Archae - 0; Bacteria - 4; Metazoa - 166; Fungi - 153; Plants - 44; Viruses - 0; Other Eukaryotes - 291 (source: NCBI BLink).
Protein Annotations
BioGrid:5020EC:3.1.-.-eggNOG:COG5241eggNOG:KOG2841
EMBL:AC009177EMBL:AF276082EMBL:AY050335EMBL:AY088915
EMBL:AY116935EMBL:CP002686EnsemblPlants:AT3G05210EnsemblPlants:AT3G05210.1
entrez:819685GeneID:819685Genevisible:Q9MA98GO:GO:0000724
GO:GO:0003684GO:GO:0005634GO:GO:0006294GO:GO:0010213
GO:GO:0010224GO:GO:0010332GO:GO:0017108Gramene:AT3G05210.1
hmmpanther:PTHR12749hmmpanther:PTHR12749:SF0HOGENOM:HOG000037440InParanoid:Q9MA98
IntAct:Q9MA98InterPro:IPR004579InterPro:IPR010994InterPro:IPR011335
KEGG:ath:AT3G05210KO:K10849OMA:DIVCDYLPaxDb:Q9MA98
Pfam:PF03834Pfam:Q9MA98PhylomeDB:Q9MA98PRIDE:Q9MA98
PRO:PR:Q9MA98ProDom:PD013585ProteinModelPortal:Q9MA98Proteomes:UP000006548
Reactome:R-ATH-5696395Reactome:R-ATH-5696400Reactome:R-ATH-6782135RefSeq:NP_187172.1
SMR:Q9MA98STRING:3702.AT3G05210.1SUPFAM:SSF47781SUPFAM:SSF52980
TAIR:AT3G05210tair10-symbols:ERCC1tair10-symbols:UVR7TIGRfam:TIGR00597
TIGRFAMs:TIGR00597UniGene:At.15981UniProt:Q9MA98
Coordinates (TAIR10) chr3:+:1479591..1481823
Molecular Weight (calculated) 45750.70 Da
IEP (calculated) 7.20
GRAVY (calculated) -0.62
Length 410 amino acids
Sequence (TAIR10)
(BLAST)
001: MANEDDDGEK SRSLHQQIAR KPKTQIVIGV PSYQEVLESS QTKSTPPSLF KPSQSFSQAF AFVKSSDVYS PPPPSSAAAS SSQPSGASQV PHSSSQTHQT
101: DGASSSSTPV ATGSVPSNTT QNRNAILVSH RQKGNPLLKH IRNVKWVFSD IIPDYVLGQN SCALYLSLRY HLLHPDYLYF RIRELQKNFK LSVVLCHVDV
201: EDTVKPLLEV TKTALLHDCT LLCAWSMTEC ARYLETIKVY ENKPADLIQG QMDTDYLSRL NHSLTSIRHV NKSDVVTLGS TFGSLAHIID ASMEDLARCP
301: GIGERKVKRL YDTFHEPFKR ATSSYPSVVE PPIPEAPVEK DVNSEEPVEE DEDFVEDSRK RKKKEPEPEK TVKTALSAVF ARYSDRLSKK KEKQKEKDTT
401: TASDAETHQN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)