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AT2G47350.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : HIT zinc finger ;PAPA-1-like conserved region
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
HIT zinc finger ;PAPA-1-like conserved region; CONTAINS InterPro DOMAIN/s: Zinc finger, HIT-type (InterPro:IPR007529), PAPA-1-like conserved region (InterPro:IPR006880); BEST Arabidopsis thaliana protein match is: PAPA-1-like family protein / zinc finger (HIT type) family protein (TAIR:AT3G06660.1); Has 3160 Blast hits to 2461 proteins in 330 species: Archae - 7; Bacteria - 184; Metazoa - 1235; Fungi - 390; Plants - 202; Viruses - 26; Other Eukaryotes - 1116 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410II19eggNOG:ENOG4111IYHEMBL:AC002337EMBL:AK229228
EMBL:BT030470EMBL:CP002685EnsemblPlants:AT2G47350EnsemblPlants:AT2G47350.1
entrez:819348ExpressionAtlas:O22909GeneID:819348GO:GO:0006338
GO:GO:0006355GO:GO:0031011Gramene:AT2G47350.1hmmpanther:PTHR21561
hmmpanther:PTHR21561:SF15HOGENOM:HOG000244118InterPro:IPR006880InterPro:IPR007529
InterPro:IPR029523KEGG:ath:AT2G47350ncoils:CoilOMA:EERASTC
PANTHER:PTHR21561Pfam:PF04438Pfam:PF04795PhylomeDB:O22909
PIR:B84914Proteomes:UP000006548RefSeq:NP_182257.1SMART:SM01406
TAIR:AT2G47350UniGene:At.43092UniProt:O22909
Coordinates (TAIR10) chr2:+:19434588..19437045
Molecular Weight (calculated) 53948.10 Da
IEP (calculated) 9.32
GRAVY (calculated) -1.08
Length 486 amino acids
Sequence (TAIR10)
(BLAST)
001: MEDNGVAYCD GMTNTVRKKR SLTCRRPRPE GSSVLTSSDR FSKISSDDIP AFDTNPRRKE FSLSHCISRA ESIAESERGN NDFRRREIIN RNKRSTEGVL
101: APASSKYPSR EVEGNGMING KGTDSGELEG ETKRMKLKIG GVSRLVHANG SSRKSSKPVT DTIRSNHDLQ ESSEDCNSPL DKKADLEGVT WDAEIDGSMT
201: GRRKQEEPSG LVRKSKRAPK KRVFDSDDDS DDEIRYLEKL KYKRVSVCNE DTESGRKQLT PSGITNGENS GKKKAVSEQA SEDMDCAEEI ETASDEKEIG
301: NDNKRESTMT SRQRALASGR SSAIDFSDGL PPTSRRKKET LSEMEQQLKK AEAAQRRKVQ IEKAARESEE GAIKKILGQD SSRKKRGDKI KKRLDDLAQE
401: KAAQEERAST CCIRTIMGPN GTTVSFPIDK VPSLFDPKPS GYPPPRENCV GPSCTNPYKY RDSKTKVPLC SLKCYKAVQG QQIAPP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)