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AT1G55830.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:30783145 (2019): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF812 (InterPro:IPR008530); Has 10940 Blast hits to 7289 proteins in 653 species: Archae - 228; Bacteria - 791; Metazoa - 6174; Fungi - 805; Plants - 342; Viruses - 19; Other Eukaryotes - 2581 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XR67eggNOG:KOG1937EMBL:CP002684EnsemblPlants:AT1G55830
EnsemblPlants:AT1G55830.1entrez:842033ExpressionAtlas:F4I1X9GeneID:842033
Gramene:AT1G55830.1hmmpanther:PTHR15668InterPro:IPR008530ncoils:Coil
PANTHER:PTHR15668PaxDb:F4I1X9Pfam:PF05667PRIDE:F4I1X9
ProteinModelPortal:F4I1X9Proteomes:UP000006548RefSeq:NP_175979.2TAIR:AT1G55830
UniGene:At.42888UniProt:F4I1X9
Coordinates (TAIR10) chr1:-:20867918..20869698
Molecular Weight (calculated) 47959.80 Da
IEP (calculated) 4.98
GRAVY (calculated) -0.82
Length 412 amino acids
Sequence (TAIR10)
(BLAST)
001: MCCLRQFLHP SEDDSYRLVR FLVERLSEIS EGRKTLTAGD IASRPKMETF RDISDDMMVN EDKDETFDMH IQKVEAVLKD LTMTSEKSHS SDSLAKNTSA
101: NVDFSSQKTD DPVTDVRSDL SLRDSSRCEE NSYEDPFETN YETVELQNQH DVLLEELESG SSQLCSLESE LELLQMAAER LLDDKKPGGS YLEQLNQQLV
201: VKRCNIMDLK KQWDDVRLTL ETKKLLLLDQ LHVEEPEAKE KFHKLRKTEL DLQSLSSEIQ KREDERCNLY NELERQPKAA PRKSYIHGIK EITKNSRKLD
301: TDIQRISGET RELQLEKNSI QERLHRSYAV VDEMVTREVK KDPAVRQVYK LLTSIHSIFE QISEKILMTD RFRRETVDYE KKLGSITARG MSLEKLQADL
401: DAIRKENESL KK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)