AT4G08320.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.965 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: protein phosphatase 5.2 (TAIR:AT2G42810.1); Has 13789 Blast hits to 9498 proteins in 788 species: Archae - 336; Bacteria - 3462; Metazoa - 3175; Fungi - 1138; Plants - 1489; Viruses - 0; Other Eukaryotes - 4189 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:5252853..5254990 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 46541.20 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.46 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.63 | ||||||||||||||||||||||||||||||||||||||||
| Length | 426 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAKLTTDSPL CRKIVRSFLN FLDSVEVAPG VDEEGLEVAR ECLREAFKLN SDSSRDDDDD SFKPISLVNL FTSLDNNETI PPPPPPPVAA TTQDPSSSGS 101: HVSVDTCKEP SFTGTSRDEL FGQLFGALEK VRYFRNTPDG DDDPAQLEKA TRIFHDCVNE MEKSGCQTFD VNSLAETLKC QGNKAMQSNL YLEAVELYSF 201: AIALTDKNAV FYCNRAAAYT QINMCSEAIK DCLKSIEIDP NYSKAYSRLG LAYYAQGKYA EAIEKGFKKA LLLDPHNESV KENIRVAEQK IREEQQRQRR 301: SQNTSTFYTQ EPEMGGGQGI PSQFSMPVNP DLMSMFMNMA GNTFPGNHSR NNEGGAGGDG TRNGADEPEI HVGGNINIDL GGTEQMPEDL SGALRSMMQM 401: FGGSMGGTGN NNPQDSNGAQ GRPSGN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)