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AT4G01960.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02380.1); Has 67 Blast hits to 67 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J0ZIeggNOG:ENOG410YW44EMBL:AC007138EMBL:AK229159
EMBL:AL161493EMBL:AY085131EMBL:BT024626EMBL:CP002687
EnsemblPlants:AT4G01960EnsemblPlants:AT4G01960.1entrez:828190GeneID:828190
GO:GO:0016021Gramene:AT4G01960.1hmmpanther:PTHR34188hmmpanther:PTHR34188:SF1
HOGENOM:HOG000237794KEGG:ath:AT4G01960OMA:ADNEENTPhylomeDB:Q9SYJ3
PIR:B85025Proteomes:UP000006548RefSeq:NP_192105.1TAIR:AT4G01960
TMHMM:TMhelixUniGene:At.34349UniProt:Q9SYJ3
Coordinates (TAIR10) chr4:-:851387..852441
Molecular Weight (calculated) 26756.40 Da
IEP (calculated) 6.11
GRAVY (calculated) -0.76
Length 236 amino acids
Sequence (TAIR10)
(BLAST)
001: MDQIVSGEEE DLDVDIEDGR FNETQEITTN LVSAEGDSEN VLNHVWSGRL SFDGSEKSAD DLVDPLMGEG KRRERSSQSL DLSDMKFDND KFKKTRKPSK
101: PPRPPKGPLL SANDQKLMRE ITELAMRKRA RIERMKTLRR LKAAKSSSPC SSIFAMIVTV IFFVFLIFQG FFTSNASLNS DNSPAPNNSA NNRMVSVQFY
201: NEFAPRERID PSPTTSFRYK RVSGADNEEN TREVTR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)