suba logo
AT3G04670.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : WRKY DNA-binding protein 39
Curator
Summary (TAIR10)
member of WRKY Transcription Factor; Group II-d
Computational
Description (TAIR10)
WRKY DNA-binding protein 39 (WRKY39); FUNCTIONS IN: calmodulin binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657), Transcription factor, WRKY, Zn-cluster (InterPro:IPR018872); BEST Arabidopsis thaliana protein match is: WRKY DNA-binding protein 74 (TAIR:AT5G28650.1); Has 3371 Blast hits to 2926 proteins in 187 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3355; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).
Protein Annotations
BioGrid:4960eggNOG:ENOG410IM0ZeggNOG:ENOG410YDPNEMBL:AC011437
EMBL:AF404860EMBL:AY053420EMBL:AY133586EMBL:CP002686
EnsemblPlants:AT3G04670EnsemblPlants:AT3G04670.1entrez:819625ExpressionAtlas:Q9SR07
Gene3D:2.20.25.80GeneID:819625Genevisible:Q9SR07GO:GO:0003700
GO:GO:0005516GO:GO:0005634GO:GO:0006351GO:GO:0043565
hmmpanther:PTHR31282hmmpanther:PTHR31282:SF12HOGENOM:HOG000029200InParanoid:Q9SR07
InterPro:IPR003657InterPro:IPR018872iPTMnet:Q9SR07MINT:MINT-1339127
OMA:ERCIDETPaxDb:Q9SR07Pfam:PF03106Pfam:PF10533
Pfam:Q9SR07Pfscan:PS50811PhylomeDB:Q9SR07PRIDE:Q9SR07
PRO:PR:Q9SR07PROSITE:PS50811ProteinModelPortal:Q9SR07Proteomes:UP000006548
RefSeq:NP_566236.1SMART:SM00774SMR:Q9SR07STRING:3702.AT3G04670.1
SUPFAM:0050605SUPFAM:SSF118290TAIR:AT3G04670tair10-symbols:ATWRKY39
tair10-symbols:WRKY39UniGene:At.18563UniProt:Q9SR07
Coordinates (TAIR10) chr3:-:1266530..1267691
Molecular Weight (calculated) 36720.70 Da
IEP (calculated) 9.78
GRAVY (calculated) -0.60
Length 330 amino acids
Sequence (TAIR10)
(BLAST)
001: MEEVEAANRS AIESCHGVLN LLSQRTSDPK SLTVETGEVV SKFKRVASLL TRGLGHGKFR STNKFRSSFP QHIFLESPIC CGNDLSGDYT QVLAPEPLQM
101: VPASAVYNEM EPKHQLGHPS LMLSHKMCVD KSFLELKPPP FRAPYQLIHN HQQIAYSRSN SGVNLKFDGS GSSCYTPSVS NGSRSFVSSL SMDASVTDYD
201: RNSFHLTGLS RGSDQQHTRK MCSGSLKCGS RSKCHCSKKR KLRVKRSIKV PAISNKIADI PPDEYSWRKY GQKPIKGSPH PRGYYKCSSV RGCPARKHVE
301: RCIDETSMLI VTYEGEHNHS RILSSQSAHT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)