AT4G20330.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Transcription initiation factor TFIIE, beta subunit | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Transcription initiation factor TFIIE, beta subunit; FUNCTIONS IN: RNA polymerase II transcription factor activity; INVOLVED IN: transcription initiation from RNA polymerase II promoter; LOCATED IN: transcription factor TFIIE complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription initiation factor TFIIE, beta subunit (InterPro:IPR016656), Transcription factor TFIIE beta subunit, DNA-binding domain (InterPro:IPR003166); BEST Arabidopsis thaliana protein match is: Transcription initiation factor TFIIE, beta subunit (TAIR:AT4G21010.1); Has 316 Blast hits to 316 proteins in 142 species: Archae - 0; Bacteria - 0; Metazoa - 124; Fungi - 101; Plants - 70; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:10982683..10984039 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 32431.70 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.04 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.74 | ||||||||||||||||||||||||||||||||||||||||
| Length | 286 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MALKEQLDKF NKQQVKCQST LSSIASSRER TSSSRQNVPL PAAITQKKPD AAPVKFSSDT ERLQNINNIR KAPVGAQIKR VIDLLYERRL ALTPEQINEW 101: CHVDMHANKA VFDSLRKNPK AHYDGRRFSY KATHDVNDKN QLLSLVRKYL DGIAVVDLKD AYPNVMEDLK ALSASGDIYL LSNSQEDIAY PNDFKCEIKV 201: DDEFKALFRD INIPNDMLDV EKELLKIGLK PATNTAERRA AAQTHGISNK PKDKKKKKQE ISKRTKLTNA HLPELFQNLN GSSSRN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)