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AT1G54170.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : CTC-interacting domain 3
Curator
Summary (TAIR10)
ataxin-2-related, similar to SCA2 (GI:1770390) (Homo sapiens); similar to ataxin-2 (GI:3005020) (Mus musculus). Member of a family of PAM2 motif containing proteins.
Computational
Description (TAIR10)
CTC-interacting domain 3 (CID3); CONTAINS InterPro DOMAIN/s: LsmAD domain (InterPro:IPR009604), Ataxin-2, C-terminal (InterPro:IPR009818); BEST Arabidopsis thaliana protein match is: CTC-interacting domain 4 (TAIR:AT3G14010.3); Has 939 Blast hits to 759 proteins in 220 species: Archae - 0; Bacteria - 26; Metazoa - 423; Fungi - 216; Plants - 125; Viruses - 0; Other Eukaryotes - 149 (source: NCBI BLink).
Protein Annotations
BioGrid:27082eggNOG:COG5180eggNOG:KOG2375EMBL:AC006577
EMBL:AY136398EMBL:BT000204EMBL:CP002684EnsemblPlants:AT1G54170
EnsemblPlants:AT1G54170.1entrez:841857GeneID:841857Genevisible:Q8L793
GO:GO:0010494GO:GO:0010603GO:GO:0034063GO:GO:0044822
Gramene:AT1G54170.1hmmpanther:PTHR12854HOGENOM:HOG000083264InParanoid:Q8L793
IntAct:Q8L793InterPro:IPR009604InterPro:IPR009818InterPro:IPR025852
KEGG:ath:AT1G54170OMA:PYKGRDSPaxDb:Q8L793Pfam:PF06741
Pfam:PF07145Pfam:PF14438Pfam:Q8L793PhylomeDB:Q8L793
PIR:H96582PRIDE:Q8L793PRO:PR:Q8L793ProteinModelPortal:Q8L793
Proteomes:UP000006548RefSeq:NP_175819.1SMART:SM01272STRING:3702.AT1G54170.1
TAIR:AT1G54170tair10-symbols:CID3UniGene:At.37271UniProt:Q8L793
Coordinates (TAIR10) chr1:-:20221353..20224919
Molecular Weight (calculated) 65392.80 Da
IEP (calculated) 4.74
GRAVY (calculated) -0.74
Length 587 amino acids
Sequence (TAIR10)
(BLAST)
001: MKPVLHSGSS SNGFSHRRFE KEAWMNNAQP SVDNTENGWD AESVDTPSQK LLVYFTTCNI GHQVEVHLKN GSVYSGIFHA ANVEKDFGII LKMACLIRDS
101: RGTKSRTVSK PSSKLLKIPA DELVQVIAKD LPLSSDSVSD SVQCEKPLEL LTDSLISQFY NVDLERELKP WVPDEDVPDC SDLENVFDDP WKRGWNQFEV
201: NKTLFGVTST FDEELYTTKL ERGPGTRELE EQALRIAREI VGENTRDIHV AEERGLQLSG KFDIDEETKY SSVCATNRFD DTCYEDDEEE EEDILLDCCN
301: NLTFGDSSAS DGKEPASTGK FYEDSWGDSL HLRSNKMVDQ SWSNSNKHTR QLMSELPSKD FPVAGNNIRN ESQLGEQRKS KFLGASLFKK PSEESVSGFE
401: DAPPPVKPSF IDGRLGLLSD RAKSENSSGW PGSSISRNSE NSAASSASNL PILSPSSSGS LSSEKSTLNP NAKEFKLNPN AKSFKPSPSA TRPQSPQSPV
501: FDGSFYYPPV PPMPGLHIRY GTGAAFPGQQ HPMMYNNTTQ LSPNQTYYSP NSPQYPQPMM VTQQRPILFM PPTPYQPEMP YKGRDSY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)