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AT5G38470.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.945
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31186290 (2019): cytosol None
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25641898 (2015): plasma membrane
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Rad23 UV excision repair protein family
Curator
Summary (TAIR10)
Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome.
Computational
Description (TAIR10)
RADIATION SENSITIVE23D (RAD23D); FUNCTIONS IN: damaged DNA binding, ubiquitin binding, proteasome binding; INVOLVED IN: response to cold, nucleotide-excision repair; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock chaperonin-binding (InterPro:IPR006636), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), UV excision repair protein Rad23 (InterPro:IPR004806), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Ubiquitin (InterPro:IPR000626), XPC-binding domain (InterPro:IPR015360), Ubiquitin supergroup (InterPro:IPR019955), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: Rad23 UV excision repair protein family (TAIR:AT3G02540.3); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:19086DIP:DIP-57201NeggNOG:COG5272eggNOG:KOG0011
EMBL:AB005248EMBL:AB109198EMBL:AB109199EMBL:AY037181
EMBL:AY058196EMBL:AY081835EMBL:AY087564EMBL:CP002688
EnsemblPlants:AT5G38470EnsemblPlants:AT5G38470.1entrez:833835ExpressionAtlas:Q84L30
Gene3D:1.10.10.540GeneID:833835Genevisible:Q84L30GO:GO:0003684
GO:GO:0005634GO:GO:0005737GO:GO:0005829GO:GO:0006289
GO:GO:0009409GO:GO:0031593GO:GO:0043130GO:GO:0043161
GO:GO:0070628hmmpanther:PTHR10621hmmpanther:PTHR10621:SF12HOGENOM:HOG000172162
InParanoid:Q84L30IntAct:Q84L30InterPro:IPR000626InterPro:IPR004806
InterPro:IPR006636InterPro:IPR009060InterPro:IPR015360InterPro:IPR015940
InterPro:IPR029071iPTMnet:Q84L30MINT:MINT-7308172OMA:MHEFEDQ
PaxDb:Q84L30Pfam:PF00240Pfam:PF00627Pfam:PF09280
Pfam:Q84L30Pfscan:PS50030Pfscan:PS50053PhylomeDB:Q84L30
PRIDE:Q84L30PRINTS:PR01839PRO:PR:Q84L30PROSITE:PS50030
PROSITE:PS50053ProteinModelPortal:Q84L30Proteomes:UP000006548Reactome:R-ATH-5696394
Reactome:R-ATH-5696395RefSeq:NP_198663.1SMART:SM00165SMART:SM00213
SMART:SM00727SMR:Q84L30STRING:3702.AT5G38470.1SUPFAM:SSF101238
SUPFAM:SSF46934SUPFAM:SSF54236TAIR:AT5G38470tair10-symbols:RAD23D
TIGRfam:TIGR00601TIGRFAMs:TIGR00601UniGene:At.25434UniProt:Q84L30
Coordinates (TAIR10) chr5:+:15404720..15407500
Molecular Weight (calculated) 40068.30 Da
IEP (calculated) 4.29
GRAVY (calculated) -0.21
Length 378 amino acids
Sequence (TAIR10)
(BLAST)
001: MKIFVKTLSG SNFEIEVKPA DKVSDVKTAI ETVKGAEYPA AKQMLIHQGK VLKDETTLEE NNVVENSFIV IMLSKTKASP SGASTASAPA PSATQPQTVA
101: TPQVSAPTAS VPVPTSGTAT AAAPATAASV QTDVYGQAAS NLVAGTTLES TVQQILDMGG GSWDRDTVVR ALRAAFNNPE RAVEYLYSGI PAQAEIPPVA
201: QAPATGEQAA NPLAQPQQAA APAAATGGPN ANPLNLFPQG MPAADAGAGA GNLDFLRNSQ QFQALRAMVQ ANPQILQPML QELGKQNPQL VRLIQEHQAD
301: FLRLINEPVE GEENVMEQLE AAMPQAVTVT PEEREAIERL EGMGFDRAMV LEVFFACNKN EELAANYLLD HMHEFEDQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)