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AT2G39550.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.924
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Prenyltransferase family protein
Curator
Summary (TAIR10)
encodes the beta subunit of geranylgeranyl transferase (GGT-IB), involved in both ABA-mediated and auxin signaling pathways.
Computational
Description (TAIR10)
PGGT-I; CONTAINS InterPro DOMAIN/s: Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Prenyltransferase/squalene oxidase (InterPro:IPR001330); BEST Arabidopsis thaliana protein match is: RAB geranylgeranyl transferase beta subunit 1 (TAIR:AT5G12210.1); Has 1518 Blast hits to 1317 proteins in 251 species: Archae - 0; Bacteria - 20; Metazoa - 603; Fungi - 437; Plants - 177; Viruses - 0; Other Eukaryotes - 281 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G39550-MONOMERBioCyc:MetaCyc:AT2G39550-MONOMERBioGrid:3878EC:2.5.1.59
eggNOG:COG5029eggNOG:KOG0367EMBL:AC004218EMBL:AF311225
EMBL:BT002465EMBL:BT008464EMBL:CP002685EnsemblPlants:AT2G39550
EnsemblPlants:AT2G39550.1entrez:818540Gene3D:1.50.10.20GeneID:818540
Genevisible:O80642GO:GO:0004662GO:GO:0009414GO:GO:0009733
GO:GO:0009737GO:GO:0009788GO:GO:0018344GO:GO:0046872
Gramene:AT2G39550.1hmmpanther:PTHR11774hmmpanther:PTHR11774:SF4HOGENOM:HOG000180333
InParanoid:O80642InterPro:IPR001330InterPro:IPR008930KEGG:ath:AT2G39550
KO:K11713OMA:YCAAAISPaxDb:O80642Pfam:O80642
Pfam:PF00432PhylomeDB:O80642PIR:T00565PRIDE:O80642
PRO:PR:O80642ProteinModelPortal:O80642Proteomes:UP000006548RefSeq:NP_181487.1
SMR:O80642STRING:3702.AT2G39550.1SUPFAM:SSF48239TAIR:AT2G39550
tair10-symbols:ATGGT-IBtair10-symbols:GGBtair10-symbols:PGGT-IUniGene:At.16938
UniProt:O80642
Coordinates (TAIR10) chr2:+:16501666..16504144
Molecular Weight (calculated) 41474.20 Da
IEP (calculated) 4.72
GRAVY (calculated) -0.13
Length 375 amino acids
Sequence (TAIR10)
(BLAST)
001: MSETAVSIDS DRSKSEEEDE EEYSPPVQSS PSANFEKDRH LMYLEMMYEL LPYHYQSQEI NRLTLAHFII SGLHFLGARD RVDKDVVAKW VLSFQAFPTN
101: RVSLKDGEFY GFFGSRSSQF PIDENGDLKH NGSHLASTYC ALAILKVIGH DLSTIDSKSL LISMINLQQD DGSFMPIHIG GETDLRFVYC AAAICYMLDS
201: WSGMDKESAK NYILNCQSYD GGFGLIPGSE SHGGATYCAI ASLRLMGYIG VDLLSNDSSS SIIDPSLLLN WCLQRQANDG GFQGRTNKPS DTCYAFWIGA
301: VLKLIGGDAL IDKMALRKFL MSCQSKYGGF SKFPGQLPDL YHSYYGYTAF SLLEEQGLSP LCPELGLPLL AAPGI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)