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AT1G22020.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.797
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : serine hydroxymethyltransferase 6
Curator
Summary (TAIR10)
Encodes a putative serine hydroxymethyltransferase.
Computational
Description (TAIR10)
serine hydroxymethyltransferase 6 (SHM6); FUNCTIONS IN: pyridoxal phosphate binding, glycine hydroxymethyltransferase activity, catalytic activity; INVOLVED IN: glycine metabolic process, L-serine metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Serine hydroxymethyltransferase, pyridoxal phosphate binding site (InterPro:IPR019798), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Serine hydroxymethyltransferase (InterPro:IPR001085); BEST Arabidopsis thaliana protein match is: serine hydroxymethyltransferase 7 (TAIR:AT1G36370.1); Has 11545 Blast hits to 11518 proteins in 2846 species: Archae - 258; Bacteria - 6402; Metazoa - 340; Fungi - 287; Plants - 348; Viruses - 6; Other Eukaryotes - 3904 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G22020-MONOMEREC:2.1.2.1eggNOG:COG0112eggNOG:KOG2467
EMBL:AC069252EMBL:AY125514EMBL:BT004532EMBL:CP002684
EnsemblPlants:AT1G22020EnsemblPlants:AT1G22020.1entrez:838807Gene3D:3.40.640.10
Gene3D:3.90.1150.10GeneID:838807Genevisible:Q9LM59GO:GO:0004372
GO:GO:0005737GO:GO:0006544GO:GO:0006563GO:GO:0030170
GO:GO:0035999Gramene:AT1G22020.1gramene_pathway:2.1.2.1gramene_pathway:GLYSYN2-PWY
gramene_pathway:PWY-181gramene_pathway:PWY-2161gramene_pathway:PWY-2201gramene_pathway:PWY-3841
HAMAP:MF_00051hmmpanther:PTHR11680hmmpanther:PTHR11680:SF7HOGENOM:HOG000239405
InParanoid:Q9LM59InterPro:IPR001085InterPro:IPR015421InterPro:IPR015422
InterPro:IPR015424InterPro:IPR019798KEGG:00260+2.1.2.1KEGG:00460+2.1.2.1
KEGG:00630+2.1.2.1KEGG:00670+2.1.2.1KEGG:00680+2.1.2.1KEGG:ath:AT1G22020
KO:K00600OMA:MYEEANIPANTHER:PTHR11680PaxDb:Q9LM59
Pfam:PF00464Pfam:Q9LM59PhylomeDB:Q9LM59PRIDE:Q9LM59
PRO:PR:Q9LM59PROSITE:PS00096ProteinModelPortal:Q9LM59Proteomes:UP000006548
RefSeq:NP_173621.1scanprosite:PS00096SMR:Q9LM59STRING:3702.AT1G22020.1
SUPFAM:SSF53383TAIR:AT1G22020tair10-symbols:SHM6UniGene:At.41627
UniPathway:UPA00193unipathway:UPA00288UniProt:Q9LM59
Coordinates (TAIR10) chr1:+:7754599..7757087
Molecular Weight (calculated) 66650.60 Da
IEP (calculated) 6.85
GRAVY (calculated) -0.36
Length 599 amino acids
Sequence (TAIR10)
(BLAST)
001: MDRIAQSDLS LGFGSSHALP LPHPPRIPIA DDSITLQIDS SFRPSSNPMP PVPLQLLEQR FDVTGSCSRV VEEDDEVVGD NDDDDQREEE QFILLGHPMK
101: LKRGRGGNSY SLASSSPCKR FVVDSGIESR RAVVRAWGNQ SIEEADPEIH EFMEKEKQRQ FRGIELIASE NFVCRAVMEA LGSHLTNKYS EGMPGARYYT
201: GNQYIDQIEI LCQERALAAF GLNHEKWGVN VQPYSCTSAN FAVFTGLLMP GERIMGLDSP SGGHMSHGYY TPGGKKVSGA SIFFESFPYK VDPRTGYIDY
301: DKLEEKALDY RPKILICGGS SYPRDWEFPR FRHIADKCGA VLMFDMAQIS GLVAAKESPN PFDYCDIVTS TTHKSLRGPR GGIIFYKRGL KPKKQSINLN
401: HCESNIQYDF EEKINFSVFP SLQGGPHNNH IAALAIALKQ AASPEYKLYM RQVKKNAKAL ASALISRKCK LITGGTDNHL LLWDLTPLGL TGKVYEKVCE
501: MCHITVNKVA IFSENGVISP GGVRIGSPAM TSRGCLEPEF ETMADFLYRA AQIASAAQRE HGKLQKEPLK SIYHCKEIAD LRNQVEAFAT QFAMPAFDM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)