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AT4G25180.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNA polymerase III RPC4
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA polymerase III RPC4; FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: transcription from RNA polymerase III promoter; LOCATED IN: DNA-directed RNA polymerase III complex; CONTAINS InterPro DOMAIN/s: RNA polymerase III Rpc4 (InterPro:IPR007811); BEST Arabidopsis thaliana protein match is: RNA polymerase III RPC4 (TAIR:AT5G09380.1); Has 141 Blast hits to 141 proteins in 63 species: Archae - 0; Bacteria - 2; Metazoa - 43; Fungi - 19; Plants - 57; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XPDHeggNOG:KOG3122EMBL:AK226744EMBL:BT014905
EMBL:BT015702EMBL:CP002687EnsemblPlants:AT4G25180EnsemblPlants:AT4G25180.1
entrez:828621GeneID:828621GO:GO:0003677GO:GO:0003899
GO:GO:0005666GO:GO:0006383Gramene:AT4G25180.1hmmpanther:PTHR13408
hmmpanther:PTHR13408:SF3HOGENOM:HOG000070944InterPro:IPR007811KEGG:ath:AT4G25180
KO:K03026OMA:SKRRFQPPANTHER:PTHR13408Pfam:PF05132
PhylomeDB:Q6ICW8Proteomes:UP000006548RefSeq:NP_194248.2STRING:3702.AT4G25180.1
TAIR:AT4G25180UniGene:At.27607UniGene:At.71280UniProt:Q6ICW8
Coordinates (TAIR10) chr4:-:12911746..12913907
Molecular Weight (calculated) 34252.10 Da
IEP (calculated) 5.17
GRAVY (calculated) -0.70
Length 311 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSGEQKSKR RFQPNPPRPS RRLPIAPTSN TEAEEDEENI KASRQFDRRI VGRRPKTETK ASSPEVAFQP SLSPLAIRSF GVPKEDDKPN SDVNPSSPAS
101: ILPAVSSVTA AQEDGEEVHN FVTRTGDDYV EPWDYRNSYY PTVLPLRKPN SGDIELLDQE EFGEVAKNRD YDENTINSAE ELGLTSVQHS KKQMFIFKIP
201: DCLPVVKQTT GATTKRSVRE YSSGISNPFE GLPEGFMGKM LVYKSGAVKL KVGDALFDVS PGPGTKIPND VVAIDIKGRN CSRIGSSAKF VTVTPDVESL
301: LNPASDMETQ K
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)