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AT3G04500.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), RNA recognition motif-related (InterPro:IPR015464); BEST Arabidopsis thaliana protein match is: oligouridylate binding protein 1B (TAIR:AT1G17370.1); Has 13292 Blast hits to 10995 proteins in 692 species: Archae - 0; Bacteria - 989; Metazoa - 6848; Fungi - 1697; Plants - 2705; Viruses - 0; Other Eukaryotes - 1053 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111N9BeggNOG:KOG0226EMBL:AC022287EMBL:AK118315
EMBL:BT005571EMBL:CP002686EnsemblPlants:AT3G04500EnsemblPlants:AT3G04500.1
entrez:819606Gene3D:3.30.70.330GeneID:819606GO:GO:0000166
GO:GO:0003676Gramene:AT3G04500.1hmmpanther:PTHR24012HOGENOM:HOG000239273
InterPro:IPR000504InterPro:IPR012677KEGG:ath:AT3G04500ncoils:Coil
OMA:LSEWPENPfam:PF00076Pfscan:PS50102PhylomeDB:Q9M837
PRO:PR:Q9M837PROSITE:PS50102Proteomes:UP000006548RefSeq:NP_187100.1
SMART:SM00360SMR:Q9M837STRING:3702.AT3G04500.1SUPFAM:SSF54928
TAIR:AT3G04500UniGene:At.40828UniProt:Q9M837
Coordinates (TAIR10) chr3:-:1212065..1213795
Molecular Weight (calculated) 26992.60 Da
IEP (calculated) 10.02
GRAVY (calculated) -0.76
Length 245 amino acids
Sequence (TAIR10)
(BLAST)
001: MSIPPSSGSS SSSSSSQYTY AANSYYSAPY QPPQPYAAAP SPAVPAPVAS IPGATVYPQP VGPVPAVYAY PQYQQAHQLF QRDAQTITPE ALENVKAALA
101: SSETEHKAET KKRAIPRKAA GQSWEDPTLS EWPENDYRLF CGDLGNEVND DVLSKAFARF PTFNMAKVIR DKRTGKTKGY GFVSFLNPAD LAAALKEMNG
201: KYVGNRPIKL RKSSWKERTD QEAAERQKHH SNKKQKTVKK SILHK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)