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AT5G18770.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.950
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : F-box/FBD-like domains containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box/FBD-like domains containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT5G18780.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JN81eggNOG:ENOG4111DCWEMBL:AC051627EMBL:AC068655
EMBL:AY056813EMBL:AY133529EMBL:CP002688EnsemblPlants:AT5G18770
EnsemblPlants:AT5G18770.1entrez:831995Gene3D:3.80.10.10GeneID:831995
Genevisible:Q93ZK9GO:GO:0009507Gramene:AT5G18770.1hmmpanther:PTHR32212
hmmpanther:PTHR32212:SF126HOGENOM:HOG000015216InParanoid:Q93ZK9InterPro:IPR001810
InterPro:IPR006566InterPro:IPR013101InterPro:IPR032675KEGG:ath:AT5G18770
OMA:EMESPITPaxDb:Q93ZK9Pfam:PF00646Pfam:PF07723
Pfam:PF08387Pfam:Q93ZK9PhylomeDB:Q93ZK9PRIDE:Q93ZK9
PRO:PR:Q93ZK9ProteinModelPortal:Q93ZK9Proteomes:UP000006548RefSeq:NP_197378.1
SMART:SM00579SUPFAM:SSF52047SUPFAM:SSF81383TAIR:AT5G18770
UniGene:At.26291UniProt:Q93ZK9
Coordinates (TAIR10) chr5:+:6261426..6263172
Molecular Weight (calculated) 55720.90 Da
IEP (calculated) 6.83
GRAVY (calculated) 0.03
Length 481 amino acids
Sequence (TAIR10)
(BLAST)
001: MVNLMRKFAK SIGRPGTEFW RGEDMISALP DHLLCHILIF LSTDESVLTS VLSSRWRNLW KWVPRLDLNT SDFPYPNDVT CAAFIDKFLN LYNESYLREF
101: KLRIDQANFR SNVSLYEPCL GVVIKKPNVR HFQVESDLLE HWCTSEIRLT LSACQALVCL KLHLVWLNDF ESLSLPCLKI MYLEDVVFPS DAAAETLISC
201: SPVLEDLKLS LHRDDVVVVL RVYSQSLKSF TLKRAVPVYA INGAHTVLVD TPRLVYMSLI DYQFKSFKII SMSDYVKVDL DVDFELMRDE LSERNIVYDL
301: LNNFSGVRNM TISWTTLKFI HRFHDMNPLP KFRDLTRLRA TMSSDASLEV LRIVLESCPK LKHFHFTLEL VNDFPEAVIT GFSRVLPRCL VFSLESVEME
401: SPITEKATEL KLVRYFLENS ATLKKLVLLL NHESTGEKHE PGVLKQLIES PRRSSLCQFE VLAVPPNPEP WWIYVKPQRF L
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)