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AT2G39910.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ARM repeat superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024), Protein of unknown function DUF2454 (InterPro:IPR018870); Has 85 Blast hits to 84 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 42; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410II7JeggNOG:ENOG4111PFCEMBL:AF002109EMBL:AK118122
EMBL:AK222143EMBL:AY085518EMBL:CP002685EnsemblPlants:AT2G39910
EnsemblPlants:AT2G39910.1entrez:818578Gene3D:1.25.10.10GeneID:818578
Genevisible:Q8GXP4Gramene:AT2G39910.1hmmpanther:PTHR14873hmmpanther:PTHR14873:SF1
HOGENOM:HOG000078705InParanoid:Q8GXP4InterPro:IPR011989InterPro:IPR016024
KEGG:ath:AT2G39910OMA:KERRITWPaxDb:Q8GXP4Pfam:Q8GXP4
PhylomeDB:Q8GXP4PIR:H84822PRIDE:Q8GXP4PRO:PR:Q8GXP4
ProteinModelPortal:Q8GXP4Proteomes:UP000006548RefSeq:NP_565917.2SUPFAM:SSF48371
TAIR:AT2G39910UniGene:At.37118UniGene:At.37119UniProt:Q8GXP4
Coordinates (TAIR10) chr2:+:16660604..16662886
Molecular Weight (calculated) 49750.10 Da
IEP (calculated) 6.65
GRAVY (calculated) -0.13
Length 436 amino acids
Sequence (TAIR10)
(BLAST)
001: MNFTKENCQF RKMLSTSSDL HGRLLRLSEP IAEILRRTQY TPQESSKVST KDILLSLLPN TSSSRLANEE SIKSLALACA LLASSRSSTH ELLSWIPENL
101: SVMGESTFWE ISRDCFSDFS SNSNAEKLVE LVEDSEKIEM LPIVLPELKD GIEKSSLGKG SDAEDVSAAM ARTPVGYAIL AAHQLRWFVT QVKKPNLVKF
201: CNLVVPCALT ALDHWSPEVK GQGMITFVHL AKNVSSGDLG LYGDVVLDAC CQNIASDDEI WIHVVELSVL LVTKIHPNNP RSPWYEKIMN EMLGHLERQP
301: RNKERRITWL RFVEPLLNSL GLFLLAHFRR IFPLFFQWMH SDDAETVLLV LERLETVVRL TWIRHSPVFP RLVDELVSLY KESSMRKDRD DIRPLILRIL
401: MLLRQCKGLR FESAWSQYQE DPNLSTVSQH IWTSSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)