suba logo
AT5G25480.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DNA methyltransferase-2
Curator
Summary (TAIR10)
Encodes a DNA methyltransferase homolog. Human Dnmt2 methylates tRNA-Asp and can methylate Arabidopsis tRNA-Asp in vitro.
Computational
Description (TAIR10)
DNA methyltransferase-2 (DNMT2); FUNCTIONS IN: DNA binding; INVOLVED IN: DNA methylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: DNA methylase, C-5 cytosine-specific (InterPro:IPR001525); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0270eggNOG:KOG0919EMBL:CP002688EnsemblPlants:AT5G25480
EnsemblPlants:AT5G25480.1entrez:832623Gene3D:3.40.50.150GeneID:832623
GO:GO:0008168Gramene:AT5G25480.1hmmpanther:PTHR10629InParanoid:F4JWT7
InterPro:IPR001525InterPro:IPR029063KEGG:ath:AT5G25480KO:K15336
OMA:EVANIHCPaxDb:F4JWT7Pfam:PF00145Pfscan:PS51679
PRIDE:F4JWT7PRINTS:PR00105PROSITE:PS51679ProteinModelPortal:F4JWT7
Proteomes:UP000006548RefSeq:NP_568474.1SMR:F4JWT7STRING:3702.AT5G25480.1
SUPFAM:SSF53335TAIR:AT5G25480tair10-symbols:AtDNMT2tair10-symbols:DNMT2
TIGRfam:TIGR00675TIGRFAMs:TIGR00675UniGene:At.30906UniProt:F4JWT7
Coordinates (TAIR10) chr5:-:8870069..8872199
Molecular Weight (calculated) 43721.00 Da
IEP (calculated) 6.35
GRAVY (calculated) -0.43
Length 383 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEQELQRIN EKKPWQVLEF YSGIGGMRYS LMASGIVSEV VEAFEINDSA NDVYQHNFKH RPYQGNIQSL TAADLDKYNA DAWLLSPPCQ PYTRQGLQKH
101: SGDARAFSFL RILELIPHTT KPPQMLFVEN VVGFETSDTH MEMIGTLTKL DYVTQEFILS PLQFGVPYSR PRYFCLAKRK PLPFKSQHSN NKLLWSPDPL
201: YGRDDQVEFG KCQAEEGLDK LLEFCKPVEK FLELAAHVDG EPSSVDDSEN GSKDCCGQEG DSVPDSVHQY LVPVSLIERW GNAMDIVYPD SKRCCCFTKS
301: YYRYVKGTGS LLATVQPKIK GKESCLKEQR LRYFTPREVA NFHSFPEDFE FPKHISLRQR YAMLGNSLSV AVVAPLLRYL FDS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)