AT4G38170.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : FAR1-related sequence 9 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FAR1-related sequence 9 (FRS9); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to red or far red light; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PMZ-type (InterPro:IPR006564), MULE transposase, conserved domain (InterPro:IPR018289), Zinc finger, SWIM-type (InterPro:IPR007527); BEST Arabidopsis thaliana protein match is: FAR1-related sequence 5 (TAIR:AT4G38180.1); Has 1073 Blast hits to 1051 proteins in 28 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 2; Plants - 1067; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:17904613..17906439 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 62253.60 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.24 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.37 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 545 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAIIAVAELV EEVSMSRVEH VLNYLKRRQL ENPGFLYAIE DDCGNVFWAD PTCRLNYTYF GDTLVFDTTY RRGKRYQVPF AAFTGFNHHG QPVLFGCALI 101: LNESESSFAW LFQTWLQAMS APPPPSITVE PDRLIQVAVS RVFSQTRLRF SQPLIFEETE EKLAHVFQAH PTFESEFINC VTETETAAEF EASWDSIVRR 201: YYMEDNDWLQ SIYNARQQWV RVFIRDTFYG ELSTNEGSSI LNSFFQGFVD ASTTMQMLIK QYEKAIDSWR EKELKADYEA TNSTPVMKTP SPMEKQAASL 301: YTRAAFIKFQ EEFVETLAIP ANIISDSGTH TTYRVAKFGE VHKGHTVSFD SLEVKANCSC QMFEYSGIIC RHILAVFSAK NVLALPSRYL LRRWTKEAKI 401: RGTEEQPEFS NGCQESLNLC FNSLRQEATK YVEEGAKSIQ IYKVAMDALD EAAKKVAAAS NRTPGTRLPN GEAYPSEEAR ETANATNHPG GEKERTILEL 501: TAELERTGQR CEVYRANLLS ILRDMEEQKF QLSLKVQNAR LSLKE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)