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AT3G53700.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
maternal effect embryo arrest 40 (MEE40); INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G64320.1); Has 58723 Blast hits to 15213 proteins in 321 species: Archae - 6; Bacteria - 72; Metazoa - 992; Fungi - 1450; Plants - 53933; Viruses - 0; Other Eukaryotes - 2270 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AL132960EMBL:AL132966
EMBL:AY057573EMBL:CP002686EnsemblPlants:AT3G53700EnsemblPlants:AT3G53700.1
entrez:824537Gene3D:1.25.40.10GeneID:824537Genevisible:Q9LFF1
GO:GO:0009507GO:GO:0009793Gramene:AT3G53700.1hmmpanther:PTHR24015
hmmpanther:PTHR24015:SF406HOGENOM:HOG000240219InParanoid:Q9LFF1InterPro:IPR002885
InterPro:IPR011990KEGG:ath:AT3G53700OMA:RDCSPNTPaxDb:Q9LFF1
Pfam:PF13041Pfam:PF13812Pfam:Q9LFF1Pfscan:PS51375
PhylomeDB:Q9LFF1PIR:T45910PRIDE:Q9LFF1PRO:PR:Q9LFF1
PROSITE:PS51375ProteinModelPortal:Q9LFF1Proteomes:UP000006548RefSeq:NP_190938.1
SMR:Q9LFF1STRING:3702.AT3G53700.1SUPFAM:SSF48452TAIR:AT3G53700
tair10-symbols:MEE40TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.20241
UniProt:Q9LFF1
Coordinates (TAIR10) chr3:+:19900303..19902567
Molecular Weight (calculated) 84556.20 Da
IEP (calculated) 5.06
GRAVY (calculated) -0.12
Length 754 amino acids
Sequence (TAIR10)
(BLAST)
001: MAFSSCLKFY PFSISQAVTL THHSFSLNLT PPSSTISFAS PHSAALSSTD VKLLDSLRSQ PDDSAALRLF NLASKKPNFS PEPALYEEIL LRLGRSGSFD
101: DMKKILEDMK SSRCEMGTST FLILIESYAQ FELQDEILSV VDWMIDEFGL KPDTHFYNRM LNLLVDGNSL KLVEISHAKM SVWGIKPDVS TFNVLIKALC
201: RAHQLRPAIL MLEDMPSYGL VPDEKTFTTV MQGYIEEGDL DGALRIREQM VEFGCSWSNV SVNVIVHGFC KEGRVEDALN FIQEMSNQDG FFPDQYTFNT
301: LVNGLCKAGH VKHAIEIMDV MLQEGYDPDV YTYNSVISGL CKLGEVKEAV EVLDQMITRD CSPNTVTYNT LISTLCKENQ VEEATELARV LTSKGILPDV
401: CTFNSLIQGL CLTRNHRVAM ELFEEMRSKG CEPDEFTYNM LIDSLCSKGK LDEALNMLKQ MELSGCARSV ITYNTLIDGF CKANKTREAE EIFDEMEVHG
501: VSRNSVTYNT LIDGLCKSRR VEDAAQLMDQ MIMEGQKPDK YTYNSLLTHF CRGGDIKKAA DIVQAMTSNG CEPDIVTYGT LISGLCKAGR VEVASKLLRS
601: IQMKGINLTP HAYNPVIQGL FRKRKTTEAI NLFREMLEQN EAPPDAVSYR IVFRGLCNGG GPIREAVDFL VELLEKGFVP EFSSLYMLAE GLLTLSMEET
701: LVKLVNMVMQ KARFSEEEVS MVKGLLKIRK FQDALATLGG VLDSRQPRRT YRSR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)