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AT5G04070.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 0.500
golgi 0.156
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NAD(P)-binding Rossmann-fold superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT5G15940.1); Has 38503 Blast hits to 38471 proteins in 2813 species: Archae - 360; Bacteria - 23739; Metazoa - 3799; Fungi - 2489; Plants - 1519; Viruses - 0; Other Eukaryotes - 6597 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1028eggNOG:KOG1208EMBL:BT011616EMBL:BT012263
EMBL:CP002688EnsemblPlants:AT5G04070EnsemblPlants:AT5G04070.1entrez:830286
Gene3D:3.40.50.720GeneID:830286GO:GO:0016021GO:GO:0016491
Gramene:AT5G04070.1hmmpanther:PTHR24319hmmpanther:PTHR24319:SF26HOGENOM:HOG000030797
InterPro:IPR002347InterPro:IPR016040KEGG:ath:AT5G04070OMA:FWRMAVL
Pfam:PF00106PhylomeDB:Q6NLR7PRINTS:PR00081Proteomes:UP000006548
RefSeq:NP_196027.3SMR:Q6NLR7STRING:3702.AT5G04070.1SUPFAM:SSF51735
TAIR:AT5G04070TMHMM:TMhelixUniGene:At.4901UniProt:Q6NLR7
Coordinates (TAIR10) chr5:+:1102238..1104192
Molecular Weight (calculated) 40073.40 Da
IEP (calculated) 8.83
GRAVY (calculated) 0.06
Length 359 amino acids
Sequence (TAIR10)
(BLAST)
001: MENLKEALRF ICSSNFWRMV LFWNIALLFS YFQLLKKSIF APKSSSSSSC SKFNHSHTPV CVITGATSGL GKATAFALSR KGFYVVLVGR SSHLLSKTLS
101: DIKRQNEDAK LKAFEVDMSS FQLVLKFRSS LEQWLFESDL HSSVQLLVNN AGILATSSRP TVEGFDRMIA TNYVGAFSLT KLLLPLLRNS PVPSRVVNVT
201: SFTHRSAFTG RFDMDSVTGV NFSRSKQYPC ARIYEYSKLC LLLFSYELHR QLHLMDDSHH ISVVAVDPGA VKTNIMHELP SYIQVIAFCG LKILGLMQSP
301: EDAAESVIDA ALAPPEISGK YFFGGRTIES STLSSDPKMA KELWDTSCLI FNELQQTHT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)