suba logo
AT2G42240.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 0.916
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G13700.2); Has 738 Blast hits to 685 proteins in 176 species: Archae - 0; Bacteria - 0; Metazoa - 282; Fungi - 195; Plants - 222; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XSBTeggNOG:KOG1457EMBL:AK221963EMBL:AK230064
EMBL:CP002685EnsemblPlants:AT2G42240EnsemblPlants:AT2G42240.1entrez:818824
ExpressionAtlas:Q56WS1Gene3D:3.30.70.330GeneID:818824GO:GO:0000166
GO:GO:0003676Gramene:AT2G42240.1hmmpanther:PTHR24012hmmpanther:PTHR24012:SF393
HOGENOM:HOG000242657InterPro:IPR000504InterPro:IPR012677Pfam:PF00076
Pfscan:PS50102PhylomeDB:Q56WS1PROSITE:PS50102Proteomes:UP000006548
RefSeq:NP_850366.2SMART:SM00360SMR:Q56WS1STRING:3702.AT2G42240.2
SUPFAM:SSF54928TAIR:AT2G42240UniGene:At.73056UniProt:Q56WS1
Coordinates (TAIR10) chr2:+:17596844..17598972
Molecular Weight (calculated) 31977.00 Da
IEP (calculated) 8.82
GRAVY (calculated) -0.29
Length 292 amino acids
Sequence (TAIR10)
(BLAST)
001: MDDLEAYYSH YNLPAMVPPP PPGVSPIPIT SAHSVYLPTH VSIGARDEVR TLFVAGLPED VKPREIYNLF REFPGYETSH LRSSDGAKPF AFAVFSDLQS
101: AVAVMHALNG MVFDLEKHST LHIDLAKSNP KSKRSRTDDG WESLKKLKSW NTTTESGFGS FQTPGMSSSA YNTIGYSPAQ SQGIANVAGR APTSRKPSKA
201: ADPCPTLFIA NMGPNCTEAE LIQVFSRCRG FLKLKIQGTY GTPVAFVDFQ DVSCSSEALH TLQGTVLYSS LTGEVLRLQY ARSRMGMRKK IN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)