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AT1G79070.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : SNARE-associated protein-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SNARE-associated protein-related; Has 39 Blast hits to 39 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J21YeggNOG:ENOG41121MIEMBL:AK118221EMBL:BT005483
EMBL:CP002684EnsemblPlants:AT1G79070EnsemblPlants:AT1G79070.1entrez:844248
GeneID:844248GO:GO:0006886GO:GO:0031083Gramene:AT1G79070.1
hmmpanther:PTHR31305IntAct:Q8GXI5InterPro:IPR017246InterPro:IPR028119
KEGG:ath:AT1G79070ncoils:CoilOMA:IDNIDHMPANTHER:PTHR31305
Pfam:PF14712PhylomeDB:Q8GXI5Proteomes:UP000006548RefSeq:NP_178028.2
STRING:3702.AT1G79070.1TAIR:AT1G79070UniGene:At.34184UniProt:Q8GXI5
Coordinates (TAIR10) chr1:-:29745018..29745807
Molecular Weight (calculated) 14884.20 Da
IEP (calculated) 4.33
GRAVY (calculated) -0.50
Length 138 amino acids
Sequence (TAIR10)
(BLAST)
001: MEQLSDSDHR DSADATTSSC QSTTAEDGQC GGGGEAMARG LSAMLESVIK DFDSKALDTL NSQDELSGSL DRLVQELDQL LENAPLPFIV QHASRISSVK
101: QRVSSLNLVL KSVQRRIDNI DHMLSANTTQ EKASSETT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)